Detailed information on CNT30238974


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 5e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377699Brassica oleraceaArabidopsis thaliana61.8681.9585.98699forward
CNT30525954Brassica oleraceaPhaseolus vulgaris60.6262.4483.8685forward
CNT30171036Brassica oleraceaTrifolium pratense60.8843.9385.76688forward
CNT30425713Brassica oleraceaPapaver somniferum59.3865.6684.05671forward

Expression of CNT30238974

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICICKQENKY*

>peptide 2 (32 aa)
MHLGYYLNLKHKGPLRSQPKGSQRKENTENRK*

>peptide 3 (31 aa)
MKNIDTDDPIFAEANRDHLPSASTKLKEHQF*

>peptide 4 (40 aa)
MVSELSTSRVMVLPVKVLTKICIPPLNLRTRWRVDSFWML*

>peptide 5 (38 aa)
ISPYEQNTNPINHASASEFKKIFDSLLSTVNVSETSPS*

>peptide 6 (29 aa)
FHHMSKTQIPLTMQVPASSRKSLILSYQQ*

Sequence

>CNT30238974
ATTTCACCATATGAGCAAAACACAAATCCCATTAACCATGCAAGTGCCAGCGAGTTCAAGAAAATCTTTGATTCTCTCCTATCAACAGTAAACGTATCAG
AGACGAGTCCATCGTAAATAATAGCAACGACTTGAAAGCATAGACAAAAGTTCATAATGCACTTGGGTTATTATCTAAACTTGAAACATAAAGGACCATT
ACGATCCCAACCGAAAGGTTCACAACGAAAAGAAAATACGGAAAACAGAAAATGAAAAACATTGACACAGACGATCCAATTTTTGCAGAAGCAAACAGAG
ATCACCTCCCAAGTGCATCAACAAAGCTCAAAGAACACCAGTTTTGACCACACAGATCAACAAGCTTAGAAGCTTCCACCACGAAGACGCAGCACAAGGT
GAAGGGTAGACTCCTTCTGGATATTGTAATCCGCAAGCGTACGACCATCCTCGAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATCCC
TTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTGTCAGAGCTCTCCACCTCCAAAGTTATTGTTTTGCCGGTGAGGGTCTTGACAAAAATCTGC
ATACCACCTCTTAGACGAAGCACAAGGTGGAGAGTCGACTCTTTCTGGATATTGTAGTCAGCGAGTGTGCGTCCATCCTCCAGCTGCTTACCAGCAAAGA
TAAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCTGAGCTCTCAACCTCGAGGGTGATGGTCTT
GCCTGTCAAAGTCTTGACAAAGATCTGCATACCACCTCTCAACCTGAGAACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTCCTT
CCATCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAG
AGCTCTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGAGTTTTCACGAAAATTTGCATCTGCAAACAAGAAAACAAGTATTAAACACTCAGCCAAGATTA
GAATCGTTCAGCTACCGTATTAGATCATGC