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Detailed information on CNT30238817


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 2e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676354Brassica oleraceaSetaria viridis41.2843.6583.64220forward
CNT30517752Brassica oleraceaJuglans regia46.7257.9178.71249forward
CNT30378008Brassica oleraceaArabidopsis thaliana71.1141.8392.61379forward
CNT30281153Brassica oleraceaChenopodium quinoa89.6873.5479.08478forward
CNT30728459Brassica oleraceaCorchorus capsularis56.8548.8782.84303forward
CNT30629341Brassica oleraceaVigna unguiculata24.3911.983.85130forward
CNT30709122Brassica oleraceaGlycine max22.8934.6683.61122forward
CNT30164689Brassica oleraceaPistacia vera42.5941.2782.82227forward
CNT30189101Brassica oleraceaSecale cereale59.8530.3581.5319forward
CNT30397803Brassica oleraceaTriticum turgidum59.140.1381.59315forward
CNT30561418Brassica oleraceaActinidia chinensis57.9730.6581.55309forward
CNT30144554Brassica oleraceaMedicago truncatula63.4139.4979.88338forward
CNT30264134Brassica oleraceaBrassica rapa69.9843.0297.32373forward
CNT30605054Brassica oleraceaGossypium raimondii25.5223.9980.88136forward
CNT30686114Brassica oleraceaTriticum urartu24.5821.9187.02131forward
CNT30349705Brassica oleraceaEragrostis tef59.4745.2279.81317forward
CNT30365925Brassica oleraceaSorghum bicolor59.4735.782.33317forward
CNT30120413Brassica oleraceaCitrus clementina25.716.9386.13137forward
CNT3038556Brassica oleraceaCucumis melo21.3914.4385.96114forward
CNT30149228Brassica oleraceaBrachypodium distachyon25.1428.2184.33134forward
CNT30101562Brassica oleraceaOryza rufipogon62.138.3182.78331forward
CNT30585446Brassica oleraceaEchinochloa crusgalli24.9544.0487.22133forward
CNT30116414Brassica oleraceaOryza nivara13.13259070forward
CNT30333676Brassica oleraceaCynara cardunculus38.0939.3481.77203forward
CNT30725707Brassica oleraceaLupinus angustifolius24.3923.5983.08130forward
CNT3048947Brassica oleraceaCucumis sativus22.898.6286.89122forward

Expression of CNT30238817

Peptides detected in this lncRNA

>peptide 1 (84 aa)
FALVSRVLLHRSLPFTASWCCFTLGVVNLWCLPHTIFLIVPVFRLHGVRVRDLGSLIPVFWFLVFRVGDGLVRDQSRLKVFSRE*

>peptide 2 (59 aa)
MGKLVIRNRGWELEMVLNVLASLGVLVLQDEMNFVRSSTLVGSKHDRVRRFTIESLRSP*

>peptide 3 (48 aa)
ICPCKQGSSSSVSSIHRILVLLHTWGCQSLVPPTYHLPHRPSLQASRR*

>peptide 4 (40 aa)
MVLSGIKAGSKSSPESKLAFFFSSPSTKILTSLSGFKMAV*

Sequence

>CNT30238817
ATTTGCCCTTGTAAGCAGGGTTCTTCTTCATCGGTCTCTTCCATTCACCGCATCCTGGTGCTGCTTCACACTTGGGGTTGTCAATCTTTGGTGCCTCCCA
CATACCATCTTCCTCATCGTCCCAGTCTTCAGGCTTCACGGCGTTAGGGTCAGGGATCTTGGCTCTCTCATCCCAGTCTTCTGGTTTCTTGTCTTCAGGG
TCGGGGATGGTCTTGTCAGGGATCAAAGCAGGCTCAAAGTCTTCTCCAGAGAGTAAATTAGCCTTCTTCTTCTCCTCTCCATCAACCAAGATTCTAACCT
CGTTGTCTGGCTTCAAGATGGCGGTGTAGACATGGGAAAGCTTGTCATAAGGAACAGAGGGTGGGAACTTGAGATGGTGCTCAACGTACTCGCCTCTCTT
GGGGTTCTTGTGCTTCAAGATGAAATGAACTTTGTTCGTAGCTCCACACTTGTCGGGTCCAAACATGATAGAGTAAGGAGATTCACTATCGAATCCCTCA
GAAGTCCATAATCATCATGTCCCTCACTCTTCT