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Detailed information on CNT30238815


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 6e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30543607Brassica oleraceaBrassica napus64.1380.9493.71429forward
CNT30612591Brassica oleraceaArabis alpina7159.5292475forward
CNT30360562Brassica oleraceaLactuca sativa40.8129.9783.52273forward
CNT30410959Brassica oleraceaPapaver somniferum41.1130.9380.36275forward
CNT30119392Brassica oleraceaCitrus clementina50.3736.6781.01337forward

Expression of CNT30238815

Peptides detected in this lncRNA

>peptide 1 (47 aa)
LPVTIAWTKNPNMENMASRPFFSSFTFNSENASGSSAKFNGSNAPPG*

>peptide 2 (49 aa)
MTTRPPPLEAPTLRRRSLEGFRAVWPVKEECWIAEVAILLYLNSKQEHK*

Sequence

>CNT30238815
CTTTACCAGTAACAATCGCTTGGACAAAGAATCCAAACATGGAGAACATGGCAAGCCGACCGTTCTTTAGCTCCTTCACTTTCAATTCCGAGAACGCCTC
TGGATCCTCAGCTAAGTTCAACGGGTCAAACGCCCCACCCGGGTAAAGCGGGTCAAGACCTTCACCAAGGGGCCCACCTCCGATTCTGTACCCTTCGATT
AAACCCATTAGCACAACTTGAGATGCCCAAATAGCTAAAATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAGTCAAGTCCTCCTTCTGAGAAGA
TCTGAGATCCTGCCTTGAACCATACGGCTTCTCCGAATTTGACTCCGTTTTTGGAGAGAATCTCTGGGAAGGTGCAGCCTAAAGCGCCTAGCATTGCCCA
TCTGCTGTGGATAACTTCGAGCTCACGGTTCTTGGCAAAGGTTTCAGGGTCGGCCGAGAGACCGGCGGTGTCCCAGCCGAGTAGACTTGACGGTACGACG
CATGACGACGCGGCCACCACCGTTGGAAGCTCCGACTTTGCGTAGGAGATCGTTGGAGGGCTTCAGGGCCGTTTGGCCAGTAAAAGAGGAGTGTTGGATA
GCTGAAGTAGCCATTCTTTTATATCTTAACTCCAAACAAGAACACAAATGAAAGAGAAAAACAAGCAAA