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Detailed information on CNT30238613


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QK06|ATPI_ARAHI, E-value = 6e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Brassica oleraceaOryza sativa57.035.2381.76296forward
CNT30317837Brassica oleraceaCorylus avellana57.0328.1484.12296forward
CNT30703171Brassica oleraceaQuercus lobata56.452.4686.01293forward
CNT3021394Brassica oleraceaCitrullus lanatus42.3935.0985.91220forward
CNT30198301Brassica oleraceaPisum sativum26.016.4990.37135forward
CNT30505351Brassica oleraceaNicotiana attenuata67.6310.185.19351forward
CNT30291829Brassica oleraceaTriticum aestivum57.037.5181.42296forward
CNT30226738Brassica oleraceaHordeum vulgare22.939.1384.87119forward
CNT30541450Brassica oleraceaBrassica napus67.6312.4997.72351forward
CNT30511101Brassica oleraceaSolanum lycopersicum5824.6583.39301forward
CNT30172770Brassica oleraceaTrifolium pratense26.0126.4785.19135forward
CNT3017990Brassica oleraceaZea mays59.349.3180.52308forward
CNT30232563Brassica oleraceaAnanas comosus59.549.0285.44309forward
CNT3057337Brassica oleraceaAmborella trichopoda65.79.1582.4341forward
CNT30726491Brassica oleraceaLupinus angustifolius58.9626.2785.29306forward

Expression of CNT30238613

Peptides detected in this lncRNA

>peptide 1 (34 aa)
FVYKRAPDQLETKINKNRVPIKGTHGPYSSPIWV*

>peptide 2 (55 aa)
MEHDKTFITVLISNHMFVCLIWSNLFEISWIINQLFSPKLKNVDSTHAIIVLITD*

>peptide 3 (45 aa)
MNSRTNSKKFWPPIEMVCGLRTARAAEPNKIAITIQEVIRTCAWT*

Sequence

>CNT30238613
TTCGTGTACAAAAGGGCTCCTGACCAGTTAGAAACAAAAATAAATAAAAACAGGGTTCCAATAAAAGGAACCCATGGACCGTATTCTTCTCCAATCTGGG
TTTGACTCACATCTCGAATGAATTCAAGGACAAATTCAAAGAAGTTTTGGCCGCCAATTGAAATGGTTTGTGGATTGCGAACCGCTAGAGCTGCGGAACC
TAATAAGATAGCAATTACAATCCAAGAAGTAATAAGGACTTGTGCATGGACTTGAAACCCCCCTATTTGTCAATAGAAATGTTGGCCTACTTCTACACCA
GATATCTCATATAACCCTTTTTTTATTAGTGTATTGATGGAACATGATAAAACATTCATAACAGTGTTGATCTCAAACCATATGTTTGTATGTTTAATCT
GGTCAAATTTATTTGAAATAAGTTGGATTATCAATCAGCTATTTTCACCTAAATTGAAAAATGTAGATAGTACACATGCTATTATTGTTTTGATCACTGA
TTAATCGGCTGGCTATTAA