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Detailed information on CNT30238125


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516757Brassica oleraceaJuglans regia9.7323.0384.21114forward
CNT30376279Brassica oleraceaArabidopsis thaliana10.4120.4791.8122forward
CNT30629841Brassica oleraceaVigna unguiculata10.1520.3482.35119forward
CNT30507461Brassica oleraceaNicotiana attenuata9.3930.3981.82110forward
CNT30710011Brassica oleraceaGlycine max8.723.6184.31102forward
CNT3042792Brassica oleraceaPrunus dulcis10.4133.0684.43122forward
CNT30635301Brassica oleraceaCapsicum annuum9.1326.9584.11107forward
CNT30564216Brassica oleraceaActinidia chinensis8.1142.683.1695forward
CNT3084712Brassica oleraceaVigna radiata6.7427.9284.8179forward
CNT3075006Brassica oleraceaBrassica juncea11.0928.8993.85130forward
CNT30614377Brassica oleraceaArabis alpina7.6834.7591.1190forward
CNT30454500Brassica oleraceaSaccharum spontaneum6.5721.2784.4277forward
CNT30360483Brassica oleraceaLactuca sativa9.5625.5784.82112forward
CNT3027985Brassica oleraceaTheobroma cacao10.4122.4786.07122forward

Expression of CNT30238125

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MNFKSDLTSVCAEEISKSNRLEIAYADVA*

>peptide 2 (43 aa)
MSNPKFSFFSVIMYRFYKITKLVMPCSCFKKRSHTIFWPFNPN*

>peptide 3 (30 aa)
MLMWHDRGSGSGDFVALRVRCLKYLILIGCY

>peptide 4 (30 aa)
MKTRVKKNNDAREYLKVQNIGQTHIFTTFI*

>peptide 5 (35 aa)
MISYRMTDYGIDICVCLSNFQIWHNLICIVYYLLT*

>peptide 6 (40 aa)
MPLGTARRLTLVAEQKLNLSWLAIGDAVVAIIFYEMLWLL*

Sequence

>CNT30238125
CAAACACGAAGAAAAGCTAAGAAAATATTCATAGTAGTATACATTAAGCATCATGAAATTCAAGATTCTTGATGAAGACAAGAGTAAAAAAAAACAATGA
TGCAAGAGAGTATTTGAAGGTCCAGAATATTGGTCAAACTCATATTTTTACTACTTTCATTTGACGTAATAAGGAAGGTCAAGAACGTAGAGAAGGAAGT
AAGCCCAAGTCACACCTGAGATCCCTCCGAAGAAGAACCCTCCAGTGAACTTAGCCCATCCCTCTGCTGTCTGAAGCTGGTCCGGTTGGAGAGATACCAC
GCGATCAATGGGCTTGACGTCACTGGGGTTTCTAAACTTCCGATGAATGGATCTCCGTTGATTGGTTGGACCACTTGGAATGTTGGCTGCCAAGTTATCC
ATGTCAGATTATTTGTATATTAACTGTTAGATCAGTATCTATATATGAAGATGGATGCGTATAACTTTTAGTTACAAATGTGATATGTCTTCTTTTTTTT
GAACAACTCATATGTGATATGTCAAACCCCAAGTTCTCTTTCTTTTCAGTCATAATGTACAGGTTCTATAAAATCACTAAATTAGTCATGCCCTGTTCAT
GTTTCAAAAAAAGAAGTCATACCATATTCTGGCCATTTAATCCTAACTAATAATATTATATAAAATATTGATTTTCCTAATTTTCCTAAGATATATGATA
TCATACCGCATGACTGATTATGGTATTGACATATGTGTGTGCTTAAGTAATTTTCAGATTTGGCACAATCTGATCTGCATCGTATACTATTTGTTAACGT
AAAGAAGATACCTTGTCTGACTGGAGAGCTCGGACGGTGAAAGAAAACGTTTTCTTGGTCGGTGAAACGCCGAAAGGAGCCCCGGATATGCCCTTAGGAA
CAGCGAGACGCCTCACATTAGTAGCAGAACAGAAGCTTAATCTTAGCTGGCTCGCCATTGGAGATGCAGTCGTTGCCATTATTTTTTATGAAATGTTGTG
GCTCTTATGAATTTTAAATCAGATTTAACTTCAGTATGTGCTGAAGAAATAAGCAAATCTAATAGACTTGAGATTGCATATGCTGATGTGGCATGACAGA
GGATCTGGTTCGGGAGATTTTGTGGCTCTTAGGGTCCGGTGTTTGAAATACTTGATTCTCATTGGATGTTAT