« Back to Brassica oleracea search


Detailed information on CNT30238010


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521010Brassica oleraceaSetaria italica71.7380.5585.88878forward
CNT30316757Brassica oleraceaCorylus avellana61.9363.2786.68758forward
CNT3021232Brassica oleraceaCitrullus lanatus70.9270.1183.41868forward
CNT3084148Brassica oleraceaVigna radiata46.1634.6884.42565forward
CNT30541590Brassica oleraceaBrassica napus95.0210097.511163forward
CNT30310177Brassica oleraceaCamelina sativa86.1190.8689.661054forward
CNT3077042Brassica oleraceaBrassica juncea98.1299.7595.421201forward
CNT30651330Brassica oleraceaRosa chinensis19.8555.189.3243forward
CNT30480841Brassica oleraceaArabidopsis halleri32.664.2591.48399forward
CNT30151899Brassica oleraceaPrunus persica26.2329.186.92321forward
CNT30427751Brassica oleraceaPapaver somniferum70.5959.6786.11864forward
CNT3037774Brassica oleraceaCucumis melo36.9358.4786.5452forward
CNT30148140Brassica oleraceaBrachypodium distachyon29.5895.2687.57362forward
CNT30101006Brassica oleraceaOryza rufipogon32.1156.4785.75393forward
CNT30496874Brassica oleraceaDigitaria exilis71.7378.3285.76878forward
CNT30176122Brassica oleraceaVigna angularis69.367582.57849forward
CNT3050294Brassica oleraceaCucumis sativus40.8581.5785.4500forward

Expression of CNT30238010

Peptides detected in this lncRNA

>peptide 1 (48 aa)
ASTASWLIMNTNKTNGKEVDKTLTAGTTYHIHYKESIQNSSESESKTK*

>peptide 2 (81 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTIGLVGVIFTIPASPFFKNFGSFSISLPERLSILVRISENLTAMWEVWQSRTGA*

>peptide 3 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSFTATFLTLNPPLSPGSASTRDSWCISTDLTSVVNPEGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

Sequence

>CNT30238010
GGCATCAACTGCCTCATGGTTGATCATGAACACGAATAAAACAAACGGTAAAGAAGTAGACAAGACATTAACCGCAGGAACGACATACCATATTCATTAT
AAAGAGAGCATCCAAAATAGTTCAGAATCCGAAAGCAAAACAAAGTAAAAAAGAAGGAAGCTAGAGTAATGAGTAGCTTCACCACCTCCGATCAAGAACC
CAGTTAAGTGAACAAAGCTCTGACGGAGAAGTAACGAAGCTGCAACACAAACAAGCGGCCAAATACAAAACTAATGTAACCAAAAAACTAAAATTGTTTT
CAACTGCGGATGATAGAGTTTTCCTCAAGGTAGTTCACTTGGCACCCTTCTTGACGGCAGCCTTGGTCACCTTGGCTCCGGTTGGGTCCTTCTTGTCAAC
GCTCTTAATGACACCGACTGCAACAGTCTGCCTCATGTCCCTCACGGCGAAACGTCCAAGAGGTGGGTACTCAGAGAAGGTCTCAACAACCATTGGCTTG
GTTGGAGTCATCTTCACCATACCAGCATCTCCATTCTTCAAGAACTTCGGCTCTTTCTCGATCTCTTTACCAGAACGCCTGTCAATCTTGGTGAGGATCT
CAGAGAACTTGACGGCAATGTGGGAAGTGTGGCAGTCAAGAACTGGAGCGTAACCGTTACCAATCTGACCCGGGTGGTTCATGATGATGACCTGGGAAGT
GAAGTTGGCAGCACCCTTGGCAGGGTCATCCTTGGAGTTGGATGCAACATACCCACGCTTGAGATCCTTCACAGCAACATTCTTGACATTGAATCCGCCG
TTGTCACCTGGAAGTGCATCCACAAGAGACTCGTGGTGCATCTCAACAGACTTAACCTCAGTGGTCAACCCTGAAGGAGCAAAGGTGACAACCATACCAG
GTTTGAGCATACCGGTTTCAACACGACCCACTGGCACCGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGTAGACGGAGGGGCTTGTCTGATGG
CCTCTTAGGCTCGTTGATCTGGTCAAGTGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAA
CCAGAGATGGGGACGAATGGGATTTTGTCCGGGTTGTACCCAACCTTCTTCAAGTAGGAAGACACCTCCTTGATAATCTCATCGTACCTAGCCTTGGAGT
ACTTAGGGGTAGTAGCATCCATCT