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Detailed information on CNT30237993


BLAST search results

BLAST vs Swiss-Prot:
sp|O23254|GLYC4_ARATH, E-value = 5e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677245Brassica oleraceaSetaria viridis13.0129.0985.9464forward
CNT30524209Brassica oleraceaSetaria italica39.2310.482.38193forward
CNT30617858Brassica oleraceaSesamum indicum15.4521.989.4776forward
CNT3070360Brassica oleraceaQuercus suber17.2829.8292.9485forward
CNT30709157Brassica oleraceaGlycine max44.9235.0285.07221forward
CNT3074841Brassica oleraceaBrassica juncea21.9521.8298.15108forward
CNT30612225Brassica oleraceaArabis alpina23.1745.0686.84114forward
CNT30650801Brassica oleraceaRosa chinensis43.0916.1385.38212forward
CNT30714749Brassica oleraceaMalus domestica golden28.8661.2183.1142forward
CNT30365509Brassica oleraceaSorghum bicolor56.540.782.01278forward
CNT30620724Brassica oleraceaCajanus cajan45.5334.8984.38224forward

Expression of CNT30237993

Peptides detected in this lncRNA

>peptide 1 (69 aa)
EVHLIRKALKVDGSSRDLLPSGCIVSMREMTTRRQIKPHDTIVRLKQGGVSGEIGRRSGVGLDIDAPGC*

>peptide 2 (50 aa)
MSSIPRHWRRFSFSMRSWISGSTVTRGVFPQDETGSMVTRVRSEIPRMSE*

>peptide 3 (41 aa)
MPSEYLLVSDEFDSAALAAFLLLDEVVDLGIDGDERGVSPG*

Sequence

>CNT30237993
GTGAAGTTCACCTTATAAGGAAGGCTCTCAAAGTAGATGGAAGTAGCAGAGATCTTCTTCCCTCCGGATGTATAGTATCCATGCGTGAGATGACCACCCG
AAGGCAGATCAAGCCCCATGATACGATCGTGAGGCTGAAGCAAGGCGGTGTAAGCGGCGAAATTGGCCGGAGATCCGGAGTAGGGCTGGACATTGACGCC
CCAGGATGCTGAATCGAGACGGAAGGCTTGGAGAGCGCGTGACTGGCAGAGATTCTCGATCTGGTCGATGAACTCGTTGCCTCCGTAGTAACGGTTACCG
GGCATGCCTTCGGAGTATTTGTTGGTCAGCGATGAGTTCGATTCCGCGGCATTGGCGGCGTTTCTCCTTCTCGATGAGGTCGTGGATCTCGGGATCGACG
GTGACGAGAGGGGTGTTTCCCCAGGATGAGACTGGATCCATGGTGACGAGAGTCCGATCTGAGATTCCGAGAATGAGTGAGTGAGAGATCTG