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Detailed information on CNT3023789


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40288|UFOG6_MANES, E-value = 2e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381814Populus trichocarpaManihot esculenta30.7734.4382.98188forward
CNT30570244Populus trichocarpaVitis vinifera27.1717.7481.33166forward

Expression of CNT3023789

Peptides detected in this lncRNA

>peptide 1 (48 aa)
ANPKSITIWKALNCCSAYNGHVATGTPNLTLSSIEFHPQCDANPPTAG*

>peptide 2 (38 aa)
MKVYARTTKTDVHNVLVHKQSLSPVFHKNFPNCRSIRT*

>peptide 3 (34 aa)
MSLLSSDGKSRASPTCFTMGPTGYTGGFLPLESE*

Sequence

>CNT3023789
GCTAATCCTAAGTCAATCACCATTTGGAAGGCATTAAATTGTTGCTCTGCGTATAATGGCCATGTAGCAACCGGAACACCAAATCTTACACTCTCTAGTA
TAGAATTCCATCCACAATGTGATGCAAATCCTCCTACTGCTGGATGAGCTAAAATATCCACTTGGGGAGCCCATCCAATCACCTTTCCGATCTTAAGTGT
ACGATCTAAAAAACCTTCAGGTAAAATTTCTTGAAAATTTAGATAATCACTTGGTGATTCTATTTTACCTTTCTGTGATGAAGGTTTACGCAAGGACCAC
AAAAACCGATGTCCACAATGTTCTAGTGCACAAGCAATCTCTTTCACCTGTTTTCCACAAAAACTTCCCCAACTGCCGAAGCATAAGAACATAACTGATG
ATGGAGGTTGATCATCAAGCCATTCCATAATGTCCTTGCTCTCGTCCGACGGCAAATCACGAGCATCTCCTACATGTTTCACAATGGGTCCAACTGGATA
CACAGGAGGGTTTTTGCCGTTAGAAAGTGAGTGAACCGCATAAGATTCGAACTCTAAAAATGTATTTACCAAGATACTCCTTGCTTCCCTCATTATTCTT
GCATGTTCAAG