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Detailed information on CNT30237803


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3079106Brassica oleraceaBrassica juncea6.0923.610063reverse complement
CNT30214058Brassica oleraceaHelianthus annuus7.2528.4110075forward
CNT30107453Brassica oleraceaOryza longistaminata7.1627.9298.6574reverse complement
CNT3035140Brassica oleraceaCucumis melo7.2530.4998.6775reverse complement

Expression of CNT30237803

Peptides detected in this lncRNA

>peptide 1 (37 aa)
HYISKNMHAHCHHLFKNKVAAKHALSFFSPLSLSIFL*

>peptide 2 (42 aa)
IIIYPKTCMPIAIIFLKTRWQLNTHYHFFPLSLSLSFSNLSF*

>peptide 3 (88 aa)
MVLDGIVSSPLRRHQSLKKQWEDLGSCSTVVNRHRYLLTALLLLAFLCTVYLYFAVTLGARHNSSCYGLAGKEKAMCQAISKGKLKLF*

Sequence

>CNT30237803
ATCATTATATATCCAAAAACATGCATGCCCATTGCCATCATCTTTTTAAAAACAAGGTGGCAGCTAAACACGCATTATCATTTTTTTCCCCTCTCTCTCT
CTCTATCTTTCTCTAATTTATCTTTCTAAAACTTAAATATAAAAAATCACTAGATCCCCGTCGTATGTAACGGAGTTAATAAACCGCGTACGGCGTCATC
CGGCAAATCTCCCCCGCTAGAAACTGCGGAGGAGATTGATCTCTCTCTCTCTCTCTCTATCTATATCGGGAACGCTGCTGGAGAATTCAACGTCTAGCGG
CGGACTAAATTCGCGTGTTGACGGAGCTGGGAGCAGCTGCTTTATCTTCTCCAGATCTCTAACCGATTCTAACCGCTTCCTGTTTCACCGGTTTGGTTTA
TCAAGGCAATGGTTCTTGATGGGATTGTATCTTCACCATTGAGGAGACACCAGTCTCTAAAGAAGCAATGGGAAGACTTGGGTAGCTGCTCAACCGTTGT
TAACAGGCATCGATACCTCCTAACAGCATTGCTTCTTTTGGCCTTCCTCTGCACTGTTTATCTTTACTTTGCTGTCACTTTAGGCGCTAGGCACAACTCC
TCCTGCTACGGCTTGGCTGGGAAAGAGAAGGCAATGTGTCAAGCCATCTCTAAAGGGAAACTCAAGTTGTTTTAATTAATTGTTACTACATTCTTTTTTC
TTTTATTGATTCTATAATGCCATTTGTGTGTATTGTTTCCATTACATGGTGATAAACCAGAGATTTGTAATCTAAACATCAAAACATTTGCACTTCTAAA
ACTTCGTTTCGTACCTACTAGATAATGGCTATATTGACCATCTGTTAACAGAGACCGTAAGCACCAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCT
CTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGTATTGTTTTTTCAAGTCAGTCTATTTTTTTTTCCTCTTCTGGTTAACTCCGTTGTGTGAT
ATCTTCTTTTTATAGGCTAAAAATATGATTGGTG