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Detailed information on CNT30237795


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLJ6|RR4_LOBMA, E-value = 1e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549732Brassica oleraceaIpomoea triloba2.4224.9388.1793reverse complement
CNT30730408Brassica oleraceaCorchorus capsularis7.8263.4292.67300forward
CNT30632355Brassica oleraceaVigna unguiculata8.4737.4491.38325forward
CNT30197932Brassica oleraceaPisum sativum12.6121.2486.57484forward
CNT3047566Brassica oleraceaPrunus dulcis11.8323.5489.43454forward
CNT3094383Brassica oleraceaSolanum tuberosum3.3459.5386.72128reverse complement
CNT30194121Brassica oleraceaSecale cereale8.2935.5388.99318forward
CNT30292655Brassica oleraceaTriticum aestivum12.4623.6482.85478forward
CNT30589320Brassica oleraceaMusa acuminata3.729.2289.44142forward
CNT30510815Brassica oleraceaSolanum lycopersicum6.3651.1590.57244forward
CNT30171250Brassica oleraceaTrifolium pratense2.6327.6791.09101forward
CNT30245953Brassica oleraceaAvena sativa2.0629.784.8179reverse complement
CNT30446760Brassica oleraceaSaccharum spontaneum6.3621.6192.62244forward
CNT30606803Brassica oleraceaGossypium raimondii4.459.7292.31169forward
CNT30217417Brassica oleraceaKalanchoe fedtschenkoi5.7947.4492.79222forward
CNT30214788Brassica oleraceaHelianthus annuus3.8145.7787.67146forward
CNT30626868Brassica oleraceaDaucus carota11.6887.1688.39448forward
CNT30351181Brassica oleraceaEragrostis tef3.5426.9383.82136forward
CNT30362312Brassica oleraceaSorghum bicolor2.3228.5392.1389reverse complement
CNT30595988Brassica oleraceaOryza meridionalis8.5731.4889.36329forward
CNT3022800Brassica oleraceaPopulus trichocarpa5.7965.2993.69222forward
CNT30332506Brassica oleraceaDioscorea rotundata7.8232.9386300forward
CNT30103542Brassica oleraceaOryza rufipogon6.0732.8691.42233forward
CNT30116859Brassica oleraceaOryza nivara7.468.1187.68284forward
CNT30604206Brassica oleraceaOryza punctata5.1349.587.31197forward

Expression of CNT30237795

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MIMINNVKSTPINYWNTKSQKIYSLNIQIFLYCIYNIYKSINHKNFPLFSSFILPRSNPFTPIYIPICKFI*

>peptide 2 (70 aa)
MNRKKIPRQNPLPCPFLVLIKKAGKGELSELLFLVIFFTSLRFFKSGESNILRQAIHLFSNRRISYLLFD*

>peptide 3 (59 aa)
MVIRVSKVRTRWMFIVPTILISPNPKEEERKGIFLKKVFVLLISRRSASSPVPPIRILY*

>peptide 4 (42 aa)
MLPHNFLQIEPASVTVVIRFNEFSVSEPYVRFSSHTAPPLGA*

>peptide 5 (38 aa)
MTRNKISATIVKVLSIKFPFIRDLGIGSNPFYNSFYFL*

>peptide 6 (36 aa)
MTEGIAFLYYKLHLQKRRFFAILIFFYSKSVRNRKK*

>peptide 7 (30 aa)
MKKIDIKSTFLCYGKCWEEQTRDPNLPTNL*

>peptide 8 (29 aa)
MKFIYLLQLIKNRFGRCLCRKPFFFLVFH*

Sequence

>CNT30237795
GTCCACTGCGTGACCTCGGGATTCTCTTGAAAGAATGTCCTTGTTCGGTAGGGTGTCTGTCGCTGTGATCAATTTCGGCTATTAAAATTATAAAACATTA
ATATAGGCAAAACTAATATGAACAAAGAGATTTGAAGATCTTTACTCGGGGAAGAGAGCCACGAAATCTATCTAGTATAACTAAGTTGGAGAACTTTGTA
TGAGATTAACTCAAAGAAAAGTATTCTTAGCAAAAAGGGTTTTATTACTGGTATGGTGAGTGAAACATAAAAGGGCTAAGGAGATAGAGTTTCTTGGATC
ATATGTTCGATCATAGAAACGGGTGAGACTAGTATTATCCTGATTAAGTAAGACTTGTAAGTTTACTTGGAAAAAATCTAGTAAAGACGTTGTGATTTTA
CCGTACTTGAGAGTTTCCTACCTCATACGGCTCGACAACCAACTCTTTTGTTTTGGTGTACCAGTTTTTTTCACTTTAACCTACTTTAACTTTATATCTA
ATTGAATGAGATTTCTTATAGATATTCATTCGGTTTTTCTTGGATTAAACAAAAGAGAGTAATTACATGAGTTTCAAACTTTCGTTTTGATTTAATTAAT
ATATTAATTAATCTAATAATAAGTTTTATCTTTTCTCCTACCTTCAGAAAAAAAAAGGCATGTCCACTGTTATTAGATATTAGAATTTTCTGAAAGGTAA
CTATCCCGCTTTCATATATAAATTTATATAGAATCGTTGAAAAAGACTTTTTTTCATACTTCATAAAAAAGAAAAAGACTTACTGTCTTTAGGATCTGAT
GCTACACCGCTGCTCAATACCTTAGGGGATCCACTCTATTACATAAGTAGATTCCTAAGATTTATCTCATATTATGATATAAATAAACAGCTCTTGTTGT
ATCGGTCCAAAACCTTTCCAGTTGATCTTTACGGTGCTTCCTCTATCAATTAAATCTTTTTTTATCCATAGAAATAAAGTATTTAGGCATATCTAGTCTT
CACTTCATATTTGATCCATGAAGTTTATTTATTTGCTACAGCTGATAAAAAATCGTTTTGGACGATGCTTATGTAGAAAGCCTTTTTTTTTTCTAGTATT
TCATTGACTAGCTGTTCGTTCTTTTTTTCTATAGTGGAGATAGTCGCACGTAATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAAAAGGGGTT
TCGTTCTAATGCCCGAAAATAATATTCTAAAGCTTTGGTATGTTCCCCATTACTTGTGTGGATAAGGCCTATATTATATAGTATATAACTTCGATCATAG
GGGTCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAATGCTTCCGCATAATTTCCTTCAGATTGAGCCGGCATCCGTTACGGTCGTCATTCGCTTT
AACGAATTCTCCGTTTCAGAACCGTATGTGAGATTTTCATCTCATACGGCTCCTCCTTTAGGTGCATAATGAAAATAATAAATATATGGATATGGAAAAA
TTTGATGTCATTATGAACTAAGCGGGGCTAATGTTTTTACAAGAAATCCCTAGCCAACCTTCTTGTAAAAGATCTTTTCTTACTACCAAGTGGATTCATA
TTCATACTAGATAAAAATAAAAAAGGAAACTCTAACAATTTCTTTGTTCTCAACGCCCCTAAATTTCCAGGAATTAGTCACTTCAACAGTCTTCAATGGT
TATACGGGTATCCAAAGTACGGACGAGATGGATGTTTATTGTTCCAACCATTTTAATTAGTCCCAATCCCAAAGAAGAAGAAAGAAAAGGAATCTTTTTG
AAGAAAGTTTTCGTGTTGTTGATTTCTCGGCGTAGTGCTTCTTCCCCTGTGCCTCCTATTCGTATATTGTATTAGTCTAGTAGGATTGATCTGTAATACG
GGAACCGTAGGTAAAAACCTTTTGCTCAATACTAGAATTCATAATTGAAGCATCTAAGGCTGCACTAATCGTGGATACATGACAGAAGGGATTGCTTTTT
TATATTATAAACTTCACCTTCAAAAGCGTAGATTTTTTGCAATACTCATTTTTTTCTATTCCAAATCGGTGAGAAATAGAAAAAAATGATAATGATAATC
AAATCGCACCATCTCTGTAATAAGTAAATGCCTCTTTTTCTCCGGAAGTTGTCGGAATGACTCGTAATAAGATATCGGCTACAATTGTAAAGGTTTTATC
AATAAAATTTCCATTTATACGCGATCTTGGCATAGGTAGTAATCCATTCTATAACTCGTTTTATTTCCTTTAACTTTTCTTTTGTGAGAAAATTTTCTCA
CAAACAAAGGAATTTTATAGTACGAACTAACATAAAAGCGGACTCGTTTTTTATAAAAAAATATTCTATCTACTTCCAATTTTTCCGATCAAAAAAGGTA
TCTATTAACCATAATCTAAAAAACGATGAATAACTCGCTATTCACCCAGGTACTCAGTCATAATCCTGATGTCGGAGAGATGGCCGAGTGGTTGAAGGCG
TAACATTGGAACTGTTATGTAGACTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTACTTTCAACTAAATAACCAATCTTACGTGATTGACCACA
ACGTATCAAATCAAATGAAAAAAATAGATATAAAATCTACATTTCTTTGCTATGGAAAATGCTGGGAAGAGCAAACAAGGGATCCAAACCTCCCTACCAA
TCTATGATACATGAATAGGAAAAAGATTCCCCGACAAAATCCCTTACCTTGTCCCTTTTTAGTTTTAATCAAAAAAGCGGGCAAAGGGGAGTTGTCCGAA
CTCTTGTTTTTAGTGATTTTTTTTACTTCACTTAGGTTTTTTAAGTCTGGCGAGAGTAATATTCTACGACAAGCAATTCATTTATTTTCAAACCGACGCA
TTTCCTATCTATTATTTGATTGACTAACCCTTCATATTGGAATGTGTGAAGAGTCAGATGGTTTGGCAATTCCTCGGGGGCAGATGACTCAAGAAGATTT
TGAACCAAAGTTCTAGAGTTTTGTTCATCCTTCACTGTAATAATATCTCGGGGTTTGCATCGATAACTTGGTATATCAACTATACGACCATTAACTAAAA
TATGCCCATGGTTAACTAATTGGCGCGCTTGAGGAATAGTCAAAGCCATACCCAACCGAAAAAGGATGTTATCCAAACGCATTTCAAGTAATTGTAATAA
AACTTGACCCGTTGACCCCTTGGCTTTTCCGGCGATACGAACATATTTAAGTAATTGGCGTTCTGTAAGACCATAATGAAAACGCAATTTTTGTTTTTCT
TCTAAACGAATACGATATTGAGATTTTTTTCCGGAGCGTGATTGGTTTCTAAGATCGCTTCCTGCCCTAGGCCTTTTACTAGTTAGTCCCGGTAAAGCCC
CCAGACGTCGTATTTTTTTAAAACGAGGCCCTCGGTAACGTGACATAAAGACTCCTTTTTTTATTGAAATTGGACAAAAACTAAAAAAAATTAAAACTGA
ACTAAATGATAATGATAAATAACGTAAAATCCACTCCAATAAACTATTGGAATACAAAGAGTCAGAAGATATATTCTCTCAATATACAGATTTTTTTGTA
TTGTATATACAATATATATAAATCAATAAATCACAAAAATTTTCCTTTATTTTCTTCATTTATTTTGCCAAGATCTAACCCTTTTACCCCAATATATATT
CCTATATGTAAGTTTATATGACATAATATAAATGGCGTGGTAACTCTTGGAAAAAGGTGAAAGAAGTCTTTTCAATCTTATTTTTTTTGAAAGTACATTA
AAAATCATGTAAAAAAAATGAAAAACTATGTAAAAGC