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Detailed information on CNT30237694


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLQ2|NU1C_LOBMA, E-value = 1e-128

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30531354Brassica oleraceaEucalyptus grandis62.7425.7588.36687forward
CNT30317759Brassica oleraceaCorylus avellana62.7433.6987.92687forward
CNT30615574Brassica oleraceaSesamum indicum58.4542.9887.34640forward
CNT30406240Brassica oleraceaBeta vulgaris20.3786.192.83223forward
CNT30201817Brassica oleraceaPisum sativum47.1283.588.37516forward
CNT30712407Brassica oleraceaGlycine max62.9255.5685.49689forward
CNT30569544Brassica oleraceaActinidia chinensis62.1918.4388.69681forward
CNT30262672Brassica oleraceaBrassica rapa54.258.399.49594forward
CNT30608772Brassica oleraceaGossypium raimondii18.965.9296.14207forward
CNT30215974Brassica oleraceaHelianthus annuus19.0928.5590.91209forward
CNT30689544Brassica oleraceaTriticum urartu36.446.3983.96399forward
CNT30360555Brassica oleraceaLactuca sativa61.6461.6489.33675forward
CNT30151942Brassica oleraceaPrunus persica62.8329.3186.05688forward
CNT3057989Brassica oleraceaAmborella trichopoda20.3742.4889.69223forward
CNT3035415Brassica oleraceaCucumis melo42.9270.3689.15470forward
CNT30148081Brassica oleraceaBrachypodium distachyon46.9450.7484.05514forward
CNT30116024Brassica oleraceaOryza nivara32.4279.2486.48355forward
CNT30723989Brassica oleraceaLupinus angustifolius36.6228.7786.53401forward

Expression of CNT30237694

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MNSEARFLVLEFEQTEFHWYNSGPQIYFYLIHFRTHHIHLNNTNLILIFIYGPRGAV*

Sequence

>CNT30237694
AAACCTAGGTTTATTTTTACAAGGGGTGCTTTATTAAAGGATTAAGTTATTACTCAACAAATAGAAATTAAAATTTGTAAAGGATGAGATGAATTCCGAA
GCGCGTTTTTTAGTTTTAGAATTTGAGCAGACAGAATTCCATTGGTATAATTCGGGACCCCAGATATATTTCTATTTAATCCATTTTAGAACACATCATA
TCCATCTAAATAATACTAATCTGATCCTTATATTTATTTACGGCCCCCGAGGAGCCGTATGAGGCGAAAACCTCATGTACGGTTTTGTAATAGCGGTGAG
AATAGTAATGTTATCATCGACTAGGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGAGGCACAATCAAAATATGGTTTTTGGGGATGGAATTTGTG
GCGTCAACCTATAGGTTGACGCCACAAATTCCATCCCCAAAAACCATATTTTGATTGTGCCTCAACTATATCAACTGTACTTAAACTGTTAGATAATCCT
AATATTGATAAAACACATAGAGTTAATGGTATTTCATAACTAATCGCTTGAGCAGCAGCTCGCAGACCACCTAAAAAAGAATATTTATTATTTGATCCAT
ATCCTGACATAAGAAGTCCGATCGGAGCAACACTTGAGATGGCAATCCATAAAAAAATACCGATATTGAGATCCGCTAAAACAAGGTGATTGCTAACAGG
AATTACTGAATAACTTAGTAAAATAGAGATAACTGCTATAGATGGTCCAATACTAAATAAAGGAGTATTTCCTCTAGATGGACGAAGATCTTCTTTGAAA
AGTAGTTTTGTCCCGTCGGCTAAAGCTTGAAGAATTCCTAACGGGCCGGCGTATTCAGGTCCAATACGTTGTTGTATCCCGGCAGATATTTCTCTTTCTA
ACCACACAATTACTAGTACACCAGTTATGATTCCCAAGACAAGAGAAAATATAGGGACAAATATCCATATGAGTCCATAGACCTCTTTTAAAGATTCCAA
TCTAAGAAAAGAATTTATAGTTTGTACTTCTGTTGCATAAATTATCATTTTAACGATCAACTTCTCCCATAATTATATCTATGCTACCGAGTATC