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Detailed information on CNT30237627


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3089355Brassica oleraceaVigna radiata21.9246.6491.01278forward
CNT30539885Brassica oleraceaBrassica napus36.67100.4395.05465reverse complement
CNT3082983Brassica oleraceaBrassica juncea44.423.4595.03563reverse complement
CNT30574483Brassica oleraceaVitis vinifera8.0422.2286.27102reverse complement
CNT30115345Brassica oleraceaEutrema salsugineum41.25101.9587523reverse complement

Expression of CNT30237627

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MTNKSKTFHKKKFYSYIFDFKTRFWLVELENDYSFLH*

>peptide 2 (49 aa)
MRWNSGLRSYSECCQDISILGFIFRSIIIQFILFNTSFESNTCFSLCLW*

Sequence

>CNT30237627
TCATCATTTCTTCGCATGTACCCGCAGTAGCATTCAAATAATGTCCTTTGATTTCACCTGTTTCAGCCTGTGATTTATAAATAGCTTCGGCACAAAATAA
GAAACGGTCTCTCCAACGCATAAATGGTTGAGAGTTCACATTCTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACATTCATAAACTGCTCTACCA
TAGTTCTTCGCGGATAACCCCAACTTAGGTTTAATAGTACATCCTAATAGGGGACGTCCATACTTGTTCAATTTATCTCTTTCAACTTGGATACCATGAG
GTGGAACTCCGGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCCTTGGTTTCATATTCAGGAGTATAATAATTCAATTTATACTCTTTAAC
ACCAGCTTTGAATCCAACACTTGCTTTAGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACAAGTCATGAATTTAGAATTCTTGCAATAAAACAAAACA
ACAAGGTCTACTCGACATAAATTAGGAATAGATTTAATTAACCTTTTTCACAGGAATCTTTCACAAAATTATCAACTAATCAGAATGATTCTTTATTAGA
CCATGATATTTGATTCGCCAAATACATCATTATTGTATATTCTTTCATATGTATAGCGCAACCTAATACTTGTTTTTCCAGTTTTGAATCTTTGACTTTT
TATAAATCGAAATATTTAATATTAAAATAATAATAAAATCACTCTTGACAGTAATATATGTTTTATATGTAAATCCTAGATATGGCAATATGCGGAATTC
ATTCATGAAAATGAAAAACAAGGGGGTGGTTGATATCGATGGGACACATAACCGGATATGCTAAAATGAAAATATGAAAAAAGGCTAATGAGATCGAAAT
AATGAATCATAAATAGAGTTCCGTTTCGAATTGGCTAGATAAAACAAAGTCTTGACTATTATGACAAATAAATCAAAGACTTTCCACAAAAAAAAATTTT
ATTCATATATTTTTGATTTTAAAACTAGGTTTTGGTTAGTTGAGCTTGAAAACGACTATTCCTTCCTTCATTGAAATTTAATAAGTAAAAATTTGAATTG
CATATTCGCTTGGGTGGTACCAATGAAATCGAGTGCTTACTCCCATTTATTATTGAATTAACCAATGAATTTACTATCGAAGATTTTTTTCTGTATTCGA
AAAATTTCGCAACAAAATTGAACATATTTTTATATTATGAGAATAAATCCTATTACTTCGGATCCAGC