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Detailed information on CNT30237621


BLAST search results

BLAST vs Swiss-Prot:
sp|P56785|TI214_ARATH, E-value = 1e-145

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30114853Brassica oleraceaEutrema salsugineum5.7724.4493.1888forward

Expression of CNT30237621

Peptides detected in this lncRNA

>peptide 1 (57 aa)
FSIFGLLILPMQSEVNYIENDFVTSFSIDLFRNLKGFYLSIHNERFLVLEKNLLFDS*

>peptide 2 (30 aa)
MKDSLFLKKIFYLILNKKGCYVYVIFKKRL*

Sequence

>CNT30237621
TTTTTCCATTTTTGGGTTATTAATCTTGCCCATGCAATCTGAGGTAAATTATATTGAGAATGACTTCGTAACCAGTTTTTCCATTGATTTATTTCGGAAT
TTAAAAGGGTTTTATCTTTCCATTCATAATGAAAGATTCCTTGTTCTTGAAAAAAATCTTTTATTTGATTCTTAACAAAAAAGGATGTTATGTATATGTT
ATATTCAAAAAAAGACTTTAATTTAGAAAAGTTACTAACTTGAATTTGTGATAATTTGTAAAATACATATGCTTGTGATAAAGAGCATAAGTCATAACTA
AAAAAAAAAATTTTTGATATGAAATTTTTTATACTCGAAATAAAATAAATGGTATTTTTTTTCTCCATTTTCCTCATTCTTGTAAATATATCCATCAAGA
ATTTTTTTTGTTGAATCAACAAAAAGTTGTGTAGTAATTCTTGGAATATTAATAATACCTAGAAAAATAGAAATAGATAGTTGTTCAACGCAAAATTAAA
AAAAAAAAACAGATTTACGAATTAATCAAGTATTTTTTTTTTAATGTCTGCCAACTTTTTTTTTATAACTCAATTATTTTATAATCATAACACAGTTTGT
TACAACTATTAGTTAGTTTTTCTTTTTCTTTTGAAATTTTTTTCGTTTGATTTCTGATTGTCTTTATTTTATCAATCACATTTTTAATTTTGTTTTCGCT
GAGTGAAGAATTTTGCCACTCCGTCGATTTTTTTTTTGAACAGATAGTTCATGAATCATCTGATTACTCATTATTGAATCTTTTTTAGTTTCATTTAATT
CATATATTTCTCTCGGGCCAACTAATGGAATTCTATTTCGTTTTGAAAGGTTTTTTTTTTTTTCTTTTAGAAAAAGCAAGTTTTTTATAATCCAGTTTTT
AATTTCTTTTTGGACTTTTAGGAAAATTGTTGCTCTTTCTTTGAAAATCCTTAAAACCGGAAAAGACTTCGTTTTGGATTTTTTGATTCTTTTTTTTAAT
TCTTTAAAAATAGGTTTAAAAAAAGAAGGCTTTGGTTTGGTAGAACCAAAAGGTAGGTCAGTTTCCAGCCCCCAAACTGTTAAAAAACGAAAATCATTTT
TTTCTCCTTTTGTTTTTTTTAGTCGAGCCTTCTGAGATGATTGAAATTTATATTTATGCCAAGGTTTAAGATAAAACGGAAATAGGATTTTTATCTGAAT
ACCATCCGTTAACCAGTTTCGTGGAAATTCTGTTTCGGATAGTTGAACCCCATTATAAGTACATTTAACATGCATTTCACGTTTCCACTCCTTTAAATCC
TCTTCCCACTCGGGAAGTTGAAATAATACGATACGGATGCTATTTTTAATTATTATCAATAAAGGCAGAATACCATCCTGGTGAAGTGGTGATGCAGGCA
GGTCCTAAAGATTCTATTGAATCTATATATAGTTGCGCTGAATCTATGCTCCTAGGCTGCGCCAGCTGAGAATGAACTTATACATGGGGCACAATATACA
ACATGCTCTACATGTTTACCTTACCA