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Detailed information on CNT30237533


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3019929Brassica oleraceaCitrullus lanatus28.1195.3986.47414forward
CNT30435662Brassica oleraceaAegilops tauschii12.7658.9389.36188forward
CNT30480921Brassica oleraceaChara braunii12.6324.4783.33186forward
CNT30434475Brassica oleraceaPapaver somniferum17.9268.7593.56264forward

Expression of CNT30237533

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MTNKSKTFHKKKFYSYIFDFKTRFWLVELENDYSFLH*

Sequence

>CNT30237533
TCATCATTTCTTCGCATGTACCCGCAGTAGCATTCAAATAATGTCCTTTGATTTCACCTGTTTCAGCCTGTGATTTATAAATAGCTTCGGCACAAAATAA
GAAACGGTCTCTCCAACGCATAAATGGTTGAGAGTTCACATTCTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACATTCATAAACTGCTCTACCA
TAGTTCTTCGCGGATAACCCCAACTTAGGTTTAATAGTACATCCTAATAGGGGACGTCCATACTTGTTCAATTTATCTCTTTCAACTTGGATACCATGAG
GTAAACATGTTAGTAACAGACCCTTCTTCAAAAAGGTCTAATGGGTAAGCTACATACGCAATAAATTGAGTTTCTTCTCCTGGAACGGGCTCGATGTGGT
AGCATCGTCCTTTTTAACGGTCAAGGCTGGTAAGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACCGCAGCCCCTGCTTC
TTCAGGTGGAACTCCGGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCCTTGGTTTCATATTCAGGAGTATAATAATTCAATTTATACTCT
TTAACACCAGCTTTGAATCCAACACTTGCTTTAGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACAAGTCATGAATTTAGAATTCTTGCAATAAAACA
AAACAACAAGGTCTACTCGACATAAATTAGGAATAGATTTAATTAACCTTTTTCACAGGAATCTTTCACAAAATTATCAACTAATCAGAATGATTCTTTA
TTAGACCATGATATTTGATTCGCCAAATACATCATTATTGTATATTCTTTCATATGTATAGCGCAACCTAATACTTGTTTTTCCAGTTTTGAATCTTTGA
CTTTTTATAAATCGAAATATTTAATATTAAAATAATAATAAAATCACTCTTGACAGTAATATATGTTTTATATGTAAATCCTAGATATGGCAATATGCGG
AATTCATTCATGAAAATGAAAAACAAGGGGGTGGTTGATATCGATGGGACACATAACCGGATATGCTAAAATGAAAATATGAAAAAAGGCTAATGAGATC
GAAATAATGAATCATAAATAGAGTTCCGTTTCGAATTGGCTAGATAAAACAAAGTCTTGACTATTATGACAAATAAATCAAAGACTTTCCACAAAAAAAA
ATTTTATTCATATATTTTTGATTTTAAAACTAGGTTTTGGTTAGTTGAGCTTGAAAACGACTATTCCTTCCTTCATTGAAATTTAATAAGTAAAAATTTG
AATTGCATATTCGCTTGGGTGGTACCAATGAAATCGAGTGCTTACTCCCATTTATTATTGAATTAACCAATGAATTTACTATCGAAGATTTTTTTCTGTA
TTCGAAAAATTTCGCAACAAAATTGAACATATTTTTATATTATGAGAATAAATCCTATTACTTCGGATCCAGC