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Detailed information on CNT30237505


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QKZ2|TI214_CRUWA, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30272010Brassica oleraceaChenopodium quinoa11.5739.3283.13243forward
CNT3062643Brassica oleraceaArabidopsis lyrata21.299.992.17447forward
CNT30321088Brassica oleraceaAsparagus officinalis13.8130.9583.1290forward

Expression of CNT30237505

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MKFLRIFFFSPHISNEKKKNLSILSKKRGECAFACKNSQITVLRLWERMDPLIISRRKSDCCE*

>peptide 2 (32 aa)
MCFCLQKFPNNSFTPLGTHGSFNYLSTKIRLL*

Sequence

>CNT30237505
TTTACGAATTAATCGAGTATTTTTTTTTAATGTCTGTCAACTTCTTTTTGACGACTCAATTATTTTAGAATCATAACACAGTTTGTTACAACTATTAGTT
AGTTTTTCTTTTTCTTTTGAAATTTCTTTCGTTTGATTTCTGATTGTCTTTATTTTATCAATCATATTTTTTTATTTTGTTTTTGCTGAGTGAAGAATTT
GGCCACTCCGTCAATTTTTTTTGTTTAATTTATATATTTCTCTCGGGCCAACTAATGGAATTCTATTTCGTTTTGAAAGGTTTTTTTTTTTTTTTTTTAG
AAAAAGCAAGTTTTTTATAATCCAGTTTTTAATTTTTTTTTGGACTTTTAGGAAAATTGTTGCTCTTTCTTTGAAAATCCTTAAAACCGGAAAAGACTTC
GTTTTGATTTTTTGATTCTTTTTTTTTAATTCTTTAAAAATAGGTTTAAAAAAAGAAGGCTTTGGTTTGGTAGAACCAAAAGGTAGGTCAGTTTCCAGCC
CCCAAACTGTTAAAAAACGAAAATCATTTTTTTCTCCTTTTGTTTTTTTTAGTCGAGCCTTCTGAGATGATTGAAATTTATATTTATGCCAAGGTTTAAG
ATAAAACGGAAATAGGATTTTTATCTGAATACCATCCGTTAACCAGTTTCGTGGAAATTCTGTTTCGGATAGTTGAACCCCATTATAAGTACATTTAACA
TGCATTTCACGTTTCCACTCCTTTAAATCCTCTTCCCACTCGGGAAGTTGAAATAATACGATACGGATGCTATTTTTAATTATTATCAATAAAGGTAATA
TAATATATTTTCTAAGAATAGATTGAGTTACTAAAATAAAACCTCTTATTATTTGAGCAAATAAGAAGCTATCCCAAGTTTCCGCAATTTCTATACGTCT
TTGTTCTTCTTTTTTTGATTGTTCTTCTTCGTTTTTATCAAAAAAAAATTTTTTTTTCCACATGAAATTTCTAAGAATTTTTTTTTTTAGCCCCCATATA
TCAAACGAAAAAAAAAAAAATTTATCTATTCTATCAAAAAAAAGGGGCGAATGTGCTTTTGCTTGCAAAAATTCCCAAATAACAGTTTTACGCCTTTGGG
AACGCATGGATCCTTTAATTATCTCTCGACGAAAATCAGATTGTTGTGAATAACGGATCAAAGCCATTTCATCTGTTTGATCAGAATTTTGATTATCTTT
GAGATTAGTATAAATCTCGTTATGCGGTTCTTTTAAATCAGTAAAAACCACTACACGTTTTGCTTTTCTTGAACGAATTCCAGGTTCGGTTGGTATATTT
TCTTCAGTTTCAGCTTCCAATTCTTCCAATTCACTTGTTAATTTGTATGACCATTGAGGAACTTGTTTATTGATTTCATGGAAATCAATAAAATTTTTTA
TAAGAGTTTGATCATTATTATAAATTATAACGACATCAAATAAAATTTTGAAAATTTTTATTTCTTCTTCTGACTGAATTTTTTCTTCTTGGGGTTCGGA
AAAAAAATAAAGTTTTTTCTCTATTGATAAAGACTTTGTTTTAAATTTTTCTATTGTTTGCTCAAATTTTTGAGAATTAATCTTCAGAAGTATAGCATGA
ATTTTGTTTATCCAAGATCCTCTTATATTCTTTTTTTTATAGGTTTTGGTTATGATTTGGAACGGAGATAATTTTTTGATTCTTCCGCGCGAAATCCCAT
GTAAAAATGGATCATAAATTTTAGGTAAATATTCTTTTTGAGTTTCGTTATGACAAAATCGAGTTGTTTTTTCCAGTATATTTTCAATAGACCCTTTTTT
ATCTAAAGCTTCAATTCTATTTAAAAATTCGTTTTTTAAATTTTCCTTTTTTTCTTCATTGACTAAACTCCAACAAGTATAAACTTGATCCGAGGTTTTT
TTTTCTGTTGTAAATGAAGGGATCTTTTTTTGTATCATTTCAAAAAAAGTTGAAAGGTTGGGGGGATATGTAAAAGATATTCGTTCTTTTCCATCACTTT
GGCATGTATAAAAAAAATATTGTGACATTTCATTTCTTACAGTATTTTCAATTTTATCATTTTTTATATATCGATTTGGTCTAATGTACTTATTAGATCT