Detailed information on CNT30237332


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Brassica oleraceaOryza sativa53.339.7681.25128forward
CNT30676912Brassica oleraceaSetaria viridis49.5823.9982.35119forward
CNT30524487Brassica oleraceaSetaria italica47.58.5581.58114forward
CNT30702712Brassica oleraceaQuercus lobata44.1712.6683.96106forward
CNT30405165Brassica oleraceaBeta vulgaris42.519.4782.35102forward
CNT30223861Brassica oleraceaHordeum vulgare43.3318.3182.69104forward
CNT30104230Brassica oleraceaOryza rufipogon53.335.281.25128forward
CNT30117905Brassica oleraceaOryza nivara53.3311.0881.25128forward

Expression of CNT30237332

Peptides detected in this lncRNA

>peptide 1 (78 aa)
DSGDGRRDSVAEELKGVGGNLFRSSSVFRLGSWSHHARLQEDTFKPQPKPSLLLRKSCQCRVLRPTRSLAPLLEPIHCP

>peptide 2 (43 aa)
MLGFRRIPSNLSPNLLCYFVSPVNVVFSVQQDLWLHYWNQSTVL

Sequence

>CNT30237332
ATGATTCCGGGGACGGCAGGAGGGATTCTGTTGCGGAGGAGCTTAAGGGTGTAGGAGGCAACTTGTTCAGGAGTAGCTCTGTCTTTAGACTCGGCTCCTG
GAGTCACCATGCTCGGCTTCAGGAGGATACCTTCAAACCTCAGCCCAAACCTTCTCTGCTACTTCGTAAGTCCTGTCAATGTCGTGTTCTCCGTCCAACA
AGATCTCTGGCTCCACTATTGGAACCAATCCACTGTCCTG