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Detailed information on CNT30237238


BLAST search results

BLAST vs Swiss-Prot:
sp|P04778|CB1C_ARATH, E-value = 9e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269346Brassica oleraceaChenopodium quinoa46.0252.7683.21411forward
CNT30709832Brassica oleraceaGlycine max62.7161.6184.11560forward
CNT30539764Brassica oleraceaBrassica napus46.1475.7499.27412forward
CNT30263105Brassica oleraceaBrassica rapa68.0953.3396.38608forward

Expression of CNT30237238

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

>peptide 2 (45 aa)
MVSKVLQGSLTSDNGLNKESKHREHSQSSVLDLLHLQLRESLWIT*

>peptide 3 (56 aa)
MGFLMDPSAWRRFSSLSHGRFRGHLKPLEKSSRPFRRKQRRREPLLRQPLRLISAA*

Sequence

>CNT30237238
AAGATATTGAGTTGGGGGGAAAAGAGTTATTTGATTAATAGTAAAGCTGTAAATCATACAAAAACTTGCAGGTTTTACATCTAAACAACATCTCCCTCTC
TCTTATTACACTCATACTGAAGCAAATACTGATAAGAACTTGGCTCACTTTCCGGGAACGAAGTTGGTTGCGAAGGCCCATGCGTTGTTGTTGACTGGAT
CAGCTAGATGGTCAGCAAGGTTCTCCAAGGGTCCCTTACCAGTGACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTT
GACCTCCTTCACCTTCAACTCCGCGAAAGCCTCTGGATCACTTGAGTAGCCCAAATAGCCAAAATGCTCTGAGCATGAACCAAGCTTGGGTTTCCCAAGT
AGTCAAGTCCTCCGTCGCTGAAGATCTGTGAGCCAGCCTTGAACCAAACCGCCTCTCCGAACTTGACTCCATTCCTGGCCAGCAACTCCGGGAAGACGCA
GCCTAGGGCTCCGAGCATGGCCCACCTGCAGTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGATCGGCTGAGAGACCGGCGGTGTCCCAC
CCGTAGTCTCCTGGGAACTCTCCGGTAAGGTAGCTCGGTGGCTCGCCGGAGAATGGACCCAAGTACTTGACTCTCTCCGCTCCGTACCATGGGCTTCCTG
ATGGACCCTTCGGCTTGGCGACGGTTTTCCTCATTGTCACACGGCCGCTTCCGAGGACATTTGAAGCCGCTGGAGAAGTCTTCACGGCCTTTCCGGCGAA
AGCAGCGGAGGAGAGAGCCATTGTTGAGGCAGCCATTGCGGTTGATCAGTGCGGCGTAAAGTAAAAACGTTTATAAGTTGTTGTTGTGTGCCA