Detailed information on CNT30237021


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C7S5|PSYR1_ARATH, E-value = 5e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30262985Brassica oleraceaBrassica rapa99.5976.0196.72244forward

Expression of CNT30237021

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MTTLSQQRIKHLLGFLLPPHLIHPRDYFSRHLRSEHLHWSFPREKLEHHDAKTVHV

>peptide 2 (59 aa)
SLFVSVSASSPLMFRLCQAHEASLFHDHSLSAADQTPPRVSPPSSFDSPTRLFLSTSSV*

Sequence

>CNT30237021
ATCTCTCTTTGTCTCCGTCTCTGCTTCCTCTCCATTGATGTTTAGGCTATGTCAAGCACACGAAGCATCTCTCTTTCATGACCACTCTCTCTCAGCAGCG
GATCAAACACCTCCTCGGGTTTCTCCTCCCTCCTCATTTGATTCACCCACGCGACTATTTCTCTCGACATCTTCGGTCTGAACACCTCCATTGGTCTTTT
CCCCGTGAGAAGCTCGAGCATCACGACGCCAAAACTGTACACGTC