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Detailed information on CNT3023679


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LXL5|SUS4_ARATH, E-value = 5e-57

BLAST vs NONCODE:
NONTCAT003036, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377308Populus trichocarpaArabidopsis thaliana25.9332.8184.25146forward
CNT30500405Populus trichocarpaCoffea canephora28.0631.8586.71158forward
CNT30588421Populus trichocarpaMusa acuminata31.9763.8380.56180forward
CNT3061548Populus trichocarpaArabidopsis lyrata33.0422.7184.95186forward
CNT30610552Populus trichocarpaGossypium raimondii36.7732.2482.61207forward
CNT30713351Populus trichocarpaMalus domestica golden28.9536.8883.44163forward
CNT30626879Populus trichocarpaDaucus carota38.3738.7882.87216forward
CNT30478109Populus trichocarpaArabidopsis halleri25.9358.6385.62146forward

Expression of CNT3023679

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MVRINMESGFSMHNDLSRTTIASSKGWQTTCHGLNNSQSKSLIQSRLHESSLGITNVTELFQELHKKFMWKVKEIETYKCSSFSTEL*

>peptide 2 (73 aa)
TALTMIKVGNMLPEAINSCESQEPLRVNFPGLPGRFCPSNWDQPCTSQRSQQGVQQPVLHGKDQYGIRIFHAQ*

>peptide 3 (32 aa)
MERSQPKFLLSVREVYALVSTRGYNVEFGIKYI

>peptide 4 (35 aa)
MSWPQQQSIQKPHTKQAARKLPWYHKCNGTFPRTT*

>peptide 5 (43 aa)
MISAGPPLQVAKVGKPHVMASTTVNPKASYKAGCTKAPLVSQM*

Sequence

>CNT3023679
CGACGGCTCTCACGATGATCAAGGTTGGAAACATGCTTCCAGAAGCCATAAACTCCTGTGAGAGTCAGGAGCCTTTGAGAGTAAATTTTCCAGGCCTCCC
TGGGAGATTTTGTCCCAGTAACTGGGATCAGCCTTGCACTTCTCAAAGAAGTCAACAAGGAGTTCAGCAGCCTGTACTCCATGGTAAGGATCAATATGGA
ATCCGGATTTTCCATGCACAATGATCTCAGCAGGACCACCATTGCAAGTAGCAAAGGTTGGCAAACCACATGTCATGGCCTCAACAACAGTCAATCCAAA
AGCCTCATACAAAGCAGGCTGCACGAAAGCTCCCTTGGTATCACAAATGTAACGGAACTTTTCCAAGAACTACATAAGAAATTTATGTGGAAAGTAAAAG
AGATAGAAACTTACAAGTGCTCGTCGTTCTCAACGGAGCTGTAAAGAAGTTCTTCAATTTCTTCATGGAAAGAAGTCAACCTAAGTTTCTTCTCAGTGTA
AGGGAAGTATATGCTCTCGTCAGCACCAGGGGATACAATGTTGAATTTGGGATCAAATACATC