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Detailed information on CNT30236705


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01667|CAB6_ARATH, E-value = 3e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375299Brassica oleraceaArabidopsis thaliana39.747.8392.51187forward
CNT30629575Brassica oleraceaVigna unguiculata21.4424.6384.16101forward
CNT30400439Brassica oleraceaTriticum turgidum23.9942.6481.42113forward
CNT30588696Brassica oleraceaMusa acuminata32.2756.5181.58152forward
CNT30171605Brassica oleraceaTrifolium pratense23.358.7886.36110forward
CNT30443761Brassica oleraceaAegilops tauschii23.9923.7981.42113forward
CNT30256504Brassica oleraceaAvena sativa23.9926.2881.42113forward
CNT30311330Brassica oleraceaCamelina sativa14.012590.9166forward
CNT30263158Brassica oleraceaBrassica rapa33.5562.4596.84158forward
CNT30612587Brassica oleraceaArabis alpina29.338.2382.61138forward
CNT30609040Brassica oleraceaGossypium raimondii38.6439.5781.32182forward
CNT30344601Brassica oleraceaEragrostis tef23.9918.7484.96113forward
CNT30360105Brassica oleraceaLactuca sativa32.9117.6180.65155forward
CNT3034379Brassica oleraceaTheobroma cacao36.9422.3179.31174forward
CNT3058384Brassica oleraceaAmborella trichopoda22.7222.4385.98107forward
CNT3037808Brassica oleraceaCucumis melo32.9121.2683.23155forward
CNT30580093Brassica oleraceaEchinochloa crusgalli23.9914.5881.42113forward
CNT30497096Brassica oleraceaDigitaria exilis23.9929.2782.3113forward
CNT30551312Brassica oleraceaOryza brachyantha23.9910.782.3113forward

Expression of CNT30236705

Peptides detected in this lncRNA

>peptide 1 (47 aa)
VLDLFNFQLLELLWVFGVSERVKCTSRVLLFLRVLLHTPLVLNKCNS*

>peptide 2 (67 aa)
PFLISLTFNSSNFFGSLEYPRGSNAPPGYFFFSGSFSILLWCSTNAIAKNSIAKIVGKVPQGTGFPK*

>peptide 3 (31 aa)
MPQLMSEFDAIVVSLSLTPFLFTTKKKDVNER

Sequence

>CNT30236705
CCGTTCTTGATCTCTTTAACTTTCAACTCCTCGAACTTCTTTGGGTCTTTGGAGTATCCGAGAGGGTCAAATGCACCTCCCGGGTACTTCTTTTTCTCAG
GGTCCTTCTCCATACTCCTCTGGTGCTCAACAAATGCAATAGCTAAGAACTCTATAGCCAAGATTGTGGGCAAAGTACCCCAAGGGACTGGGTTCCCCAA
GTAAGTGGCTTGTCCTCCAGGAGCAGAACCGTCGAGGTAAGCTGGTCTTGGCTCGCCGGGCATCCAGTGAGCAGCCATTCTGATACGGCCAACGTTCCCG
GCGTTGGGGAGTGGAACTCCGGCGGAGACGAATTTAGACTTTGAAGAAGAAAGAAGAGAAGGGTAGACGGCGGCGATGCCGCAGCTCATGAGCGAGTTCG
ACGCCATTGTTGTCTCTCTCTCTCTAACTCCCTTTCTGTTTACCACAAAGAAGAAAGATGTGAACGAGAGG