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Detailed information on CNT30236630


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373393Brassica oleraceaArabidopsis thaliana22.0766.1293.75160forward
CNT30526392Brassica oleraceaPhaseolus vulgaris27.1762.1579.19197forward
CNT30478704Brassica oleraceaArabidopsis halleri16.2831.5594.07118forward

Expression of CNT30236630

Peptides detected in this lncRNA

>peptide 1 (37 aa)
FFFLGGCETIYNLKIQVKTRGFKNYKSLSCPCPFVST*

>peptide 2 (47 aa)
MSFCLNMKMGSQTTNFKYIKSLAFFTIISNELSITRINGSKEEESNV*

Sequence

>CNT30236630
TTTTTTTTTTTAGGTGGTTGTGAAACTATATATAATCTGAAAATTCAAGTAAAAACAAGAGGCTTTAAGAATTACAAAAGTTTAAGCTGTCCATGTCCTT
TTGTCTCAACATGAAGATGGGCTCACAAACCACAAATTTTAAGTACATAAAGAGTTTAGCTTTCTTCACCATCATCAGTAATGAACTTTCCATTACCAGG
ATTAATGGCAGCAAAGAAGAAGAAAGCAACGTTTAAGAGGACGAGGGGTTCAATATCTTGAATTGGAATACCAGTCTCAATGTTGAGTTGAGCCAAGGCT
CCTTTCCCGGTTATAATCTCTCCTATCAATGAAAATGCTATTCCCAACTGTGCCAATCTTCCTACGAACAACTCGTTTGCCTTCGTGAACCCAAACAATG
GACCTTCACACAATTAAACAACAAACATTTATAGATTAGACCTCACAACTCTAAGTAATATCATATGTGTATCTTCTTAGGGTGTAGATAAATCAACATA
AAAGTAAATTCAGACACTATCCCTGATTCAAACACCAATTACGGATATTTAAGCTTCAGTTTATCCTTGGTAAATTAGACTCAAAACTAATCTAATTTTG
GGCATACCGCTAAGGGTCTCTACGACTACTAGATAGACCCATTCAGTAATATTTTGCACATTAGTTGTTCAGACCAATGGCATTTGCAACAAGCAGAGAA
AGGGGATCTTGAGAAAAGAGACCTT