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Detailed information on CNT30236625


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3079309Brassica oleraceaBrassica juncea13.945.9993.58109reverse complement
CNT30550344Brassica oleraceaOryza brachyantha8.0426.8190.4863reverse complement

Expression of CNT30236625

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MFARDGKDLLNGLGPLHIADLSSSILVHQNPFLWETQLFDTAYC*

>peptide 2 (56 aa)
MEVTVLSQTTTSAKMEGGVARIERRKKTRPQLNNCRRRKDLRDPFDGLCCVEGISR*

>peptide 3 (31 aa)
GDAAFNPRGVCSMTVLIVSDIVLPAVISSSP*

Sequence

>CNT30236625
ATGGTGATGCAGCCTTTAACCCTCGTGGAGTCTGTTCAATGACCGTTCTGATCGTCTCCGACATAGTTCTCCCAGCGGTCATCTCATCATCGCCGTAAGA
CGGCTCAGATCCACTACCAAGCTGACGGATCATGTTTGCTCGAGATGGAAAGGATCTCTTGAATGGGCTTGGCCCATTACATATTGCAGATCTGTCCAGC
AGTATTCTAGTTCACCAAAACCCATTTTTATGGGAAACTCAACTCTTTGACACAGCCTATTGTTAGATTTGGCTAGTATATCCTGCCGATTTCCAGTGGG
TTCTTTGACCAAAGCTTTTCCAGTTAATGCTGAAACATTTCGAACCATTGGGAGAGATAGGAGCAGTGGCTGGCAGAACGAGTGGCTAACGATTTATAAG
ATTCCTGGTCCAATCCTAGTAAGCGAGCCCTGATTTGAAGTTGAATCTCTCTCTGAATTACATGTGAAGGTTTCAGAATACCTGAGTGGAGTCTAGAGTT
TCTCTCTCGCCATAAAAAAATAGATGCAGGCTTGAAAGATAAGCTTAATAATAGCTTTACTTTCTTGATGGAGGTGACTGTCCTCAGCCAAACCACAACA
TCAGCAAAGATGGAAGGTGGAGTAGCGAGGATTGAGAGAAGAAAGAAGACCAGACCTCAGTTGAATAATTGCAGGAGAAGAAAAGATCTCCGAGATCCTT
TCGACGGACTATGTTGTGTTGAAGGTATATCTAGATGATCCGATCGATTGCGTTTTTGGTCCAATGTGAAAAGCTGCATCCAAG