« Back to Brassica oleracea search


Detailed information on CNT30236524


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315343Brassica oleraceaCorylus avellana17.7526.9386.09115forward
CNT30372926Brassica oleraceaArabidopsis thaliana13.4322.6696.5587reverse complement
CNT30508717Brassica oleraceaSolanum lycopersicum14.8144.8683.3396forward
CNT30309702Brassica oleraceaCamelina sativa27.9318.5893.37181forward
CNT3081485Brassica oleraceaBrassica juncea77.7856.8887.1504forward
CNT30264014Brassica oleraceaBrassica rapa28.0924.7398.35182forward
CNT30611294Brassica oleraceaArabis alpina27.9310.9790.61181forward
CNT30601253Brassica oleraceaFraxinus excelsior13.4337.8388.5187forward

Expression of CNT30236524

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MNWVQRKIYLYNVTFGLYMLDWWERYLFNGLVVVLMWFVAYNGTRYFSELFKRHLT*

>peptide 2 (36 aa)
LNKPGRKCGTNGQKDKTFPALMPPSNFDSSLRYLRL*

>peptide 3 (69 aa)
MKAMFGFSCAVEHEKWNHLRLTTFGFSFEDVYQQNLYAASPLILLAFLQSSISLKTVQIVSVLFTIFWK*

Sequence

>CNT30236524
ACTTAAATAAACCTGGTCGGAAGTGCGGAACTAATGGTCAAAAAGACAAGACTTTTCCAGCTTTGATGCCTCCGTCTAATTTTGATTCTTCTCTTCGATA
CTTGAGACTCTGAGGAAGTGGGATCAGATATGAACTGGGTTCAACGCAAAATCTATCTTTACAATGTCACGTTCGGGCTCTACATGCTTGATTGGTGGGA
ACGATACCTCTTCAATGGTTTGGTGGTAGTCTTGATGTGGTTCGTAGCTTACAACGGTACACGCTACTTTTCTGAACTCTTCAAGAGGCATTTGACATGA
AAGCAATGTTTGGTTTCTCGTGCGCGGTAGAGCATGAAAAGTGGAACCACCTAAGGCTTACCACGTTTGGTTTCAGTTTCGAAGACGTATACCAACAAAA
CCTCTATGCTGCTTCACCTCTAATTCTGTTAGCTTTCCTCCAAAGTTCGATATCACTTAAGACTGTTCAAATTGTCTCTGTCCTTTTTACCATCTTTTGG
AAATAACATAACTTATTTGTAAACGCATTAGATCGCAAGCCTTCATGTTGTATTCCCGATCTCTTTGAGACATGGCCAAACCAATACTACAATGATTGTG
CTCTTTTTGACTCTGTGACTAGCGAATACTACTTATCATTCTTCATCC