Detailed information on CNT30236419


BLAST search results

BLAST vs Swiss-Prot:
sp|Q35639|NU5M_PEA, E-value = 1e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201206Brassica oleraceaPisum sativum6.740.6884.73131forward
CNT30586565Brassica oleraceaMusa acuminata5.4223.384.91106forward
CNT30342876Brassica oleraceaEragrostis tef7.6341.8585.91149forward
CNT30360933Brassica oleraceaLactuca sativa30.7630.3884.53601forward
CNT30152376Brassica oleraceaPrunus persica21.1928.3883.82414forward
CNT30337279Brassica oleraceaCynara cardunculus6.6549.8185.38130forward

Expression of CNT30236419

Peptides detected in this lncRNA

>peptide 1 (65 aa)
TYQRYYIHYRRDNYKKRKKTSYKKNSRCYHSSSMYKSRNRSRALHGIRQPYMKRKLCRFSNRTHK*

>peptide 2 (52 aa)
MFHKIKNPFYFILKFFISYSLVCIYIYIYIFSKGIIKKRIFSNLNRNFFELV*

>peptide 3 (55 aa)
MAVPKKRTSISKKRIRKKIWKRKGYWTSLKAFSLGKSLSTGNSKIFLYNKINKKH*

>peptide 4 (51 aa)
PIKDIIYIIEGITIKRGRRRATRKIPAATIVAACIRAEIGVGPSMASGNHT*

>peptide 5 (32 aa)
MSLTSNYTTEKLFSFLNGSSKKTYFYLEKAYS*

Sequence

>CNT30236419
ACCTATCAAAGATATTATATACATTATAGAAGGGATAACTATAAAAAGAGGAAGAAGACGAGCTACAAGAAAAATTCCCGCTGCTACCATAGTAGCAGCA
TGTATAAGAGCCGAAATAGGAGTAGGGCCCTCCATGGCATCCGGCAACCATACATGAAGAGGAAATTGTGCAGATTTAGCAATAGGACCCACAAATAATA
GAAATGCACACAAAGTAAGGAATAAGAGATTTATTCTATTATTTAATATTAAATTATTGAATATTTCGAACAAATCGTGAAATTCGAAACTGCCAGCTAT
CCAATAAAGACCTAAAATTCCTAATAATAAACCAAAATCCCCTACACGATTGGTTACAAAAGCTTTTTGACAGGCATTCGCTGCAATAGGTCGTGTGAAC
CAAAAACCTATTAATAAATACGAACACATTCCAACTAATTCCCAAAAAAAATAAACTTGGATCAAATTAGAACTAGTAACTAATCCTAACATTGAAGTAT
TAAAAAAACCCATATAAGCAAAAAACCTCAGATATCCTTGATCATGAGACATATAATTATCACTATAAATCAGAACCAAAATTCCAACAGTTGTAATTAA
TATTGACATAATAGAAGTAAGTGGATCAATAAAGTAACCGAACTCAAAAGAAAATGCATTATTTATGGTCCAAGACCATACATTTTGATGAATGCAACTT
AGAAAAATTTGTTGAATAGATAGATAGAGCGAAAAGATCATAACTATACTTAACAAAAAAATACTCAGAAACGTCCACATACGTCGAAGGTTTTTTGTTG
CTGTCGGAAAAAGTAGAAGTCCAGCTCCGAGTAAAATAGGTACTGGAAGTGGAATGAAAGGGATGATCCATGAATATTGATATGTATGTTCCATAAAATA
AAAAACCCTTTTTATTTTATTCTTAAATTTTTTATTTCTTATTCACTGGTTTGTATATATATATATATATATATTTTTTCAAAGGGGATAATAAAAAAGC
GCATTTTTTCAAACTTAAATAGAAATTTTTTCGAATTAGTATAATCCTTCATAAACCTTTGAAAAGAAATATATTCAAATCAAAAAATTAGAAGTTATTA
ACTAATATTACTAAGTTACTGTAAAAAAAACGATTTGTCTTTTTTTTTTTTTTTTACTACTAAAAAAAATTTTGATTTTATGCAGATACAGAAAAATGAA
TTATAATTCCGTATTACAATAATTTATATACATATATTAAGAATAGAACAAAGATTTACACGACAAAAAAATACTTAATATTAAGTATAAAAAAAAGTTA
TTTGGGTTTGATTATTTAGAATTATTATTGAATTATGGAATTTAGTTATTGTCTTCCAGTACACTAAGTGAGCTTTTTTTTCAAGAAATATTATTATAAT
CGATATTTTTTTTTACATATGAAGTGAAGAAATTTAATAAAATTTTTTTCTAATATAATCTAAATCTATCAGTATAGATTAATTAAATGAGCACTCTCAT
ACGGATTTAAAACGTTAAATACAAAAAATTTTTCAAGAAAAAGGGAAAAAATAGTTGGGTTTTAAACTTTTGAATGTCTGTTTTGTTTGAAAAATAATAT
ATAATAAAATTTAAAATAAAAAAATTACTCAATATGGAGTACGAAAGAATAGAATAATAAATGTCTTTGACATCCAATTATACCACTGAAAAACTTTTTT
CATTTTTGAATGGCAGTTCCAAAAAAACGTACTTCTATCTCGAAAAAGCGTATTCGTAAAAAAATTTGGAAAAGGAAGGGATATTGGACATCGTTGAAAG
CTTTTTCTTTAGGGAAATCACTTTCTACAGGTAATTCAAAAATTTTTTTGTACAACAAAATAAATAAAAAACACTAGAATCATTAGAATTAGCCTAACGT
AAAAACCAATTTTTTAGAATACATATAAATTAAAAAAATCTATAGGAACCAAAA