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Detailed information on CNT30236148


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLS9|PSBC_NASOF, E-value = 3e-163

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Brassica oleraceaOryza sativa27.7330.2888.26426forward
CNT30730376Brassica oleraceaCorchorus capsularis14.1354.3991.71217forward
CNT30201936Brassica oleraceaPisum sativum35.4861.6593.94545forward
CNT30284073Brassica oleraceaTriticum aestivum46.0322.4691.09707forward
CNT30563336Brassica oleraceaActinidia chinensis7.2354.9596.4111reverse complement
CNT30539896Brassica oleraceaBrassica napus52.646.36100808forward
CNT30555990Brassica oleraceaOryza glaberrima33.7233.0191.12518forward
CNT30441515Brassica oleraceaAegilops tauschii26.4363.1488.42406forward
CNT30252262Brassica oleraceaAvena sativa37.1194.0691.23570forward
CNT30664842Brassica oleraceaTriticum dicoccoides23.3152.6589.94358forward
CNT30351849Brassica oleraceaEragrostis tef7.127.3992.66109reverse complement
CNT30367840Brassica oleraceaSorghum bicolor20.1268.8292.23309forward
CNT30426340Brassica oleraceaPapaver somniferum28.9755.9793.93445forward
CNT30109402Brassica oleraceaOryza longistaminata27.7332.3588.73426forward
CNT30148380Brassica oleraceaBrachypodium distachyon25.8529.2888.41397forward
CNT30100129Brassica oleraceaOryza rufipogon27.7340.5788.73426forward
CNT30557406Brassica oleraceaPanicum hallii24.4188.8688.27375forward

Expression of CNT30236148

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MEPNHTCPPIISSKSSTLTIHPSPPKGDFSK*

>peptide 2 (33 aa)
MQKVWLRYARFHQIYKWNLTIHALQLYLPNRPH*

>peptide 3 (52 aa)
MSFFNLLKSKPLGPLKGSNQGARRSQKRIVSPPKITSPVGERIKYLPKPVGP*

>peptide 4 (32 aa)
MKWVQCPIMKPLEKEDESKYSRYTKTRRKEPTR

Sequence

>CNT30236148
ATTGAAAGAAAGAAAGAAGACTTTTTAATATGACCCGATTTTTACTTTCCTATTTTAACTACTACTTTAGTTAAGAGGAGTCATAGAAAGAACAGGTTCA
AAATCACGATCAATTCCTTTTTCAAATCCTGCTGCCGCTGCCCGAGCTCTTCCCGCGTGCCATAAATGACCCACGAATAGGAAGAATCCTAGAACAAAAT
GAGAGGTAGATAACCAACTTCTCGGAGAGACGTAATTGACTGCATTGATCTCAGTAGCTACGCCCCCTACAGAATTTAAGGAACCTAAAGGAGCATGAGT
CATATATTCTGCAGAACGTCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTTAAGTCCAAACCATTAGGACCCCTTAAAGGTTCTAACCAGGGA
GCACGCAGATCCCAAAAACGCATTGTTTCTCCTCCAAAAATAACTTCTCCAGTCGGGGAACGCATTAAGTATTTACCTAAACCTGTAGGTCCGTAAAACT
CACTAGGGTAAGCAGTATTATTAAACCAGACAAAACAACAAGCAATGAAACCACAAACAGATAAAGCAGCTAAACTATAAGACAAGTAAGCCTCCCCAGA
CCATACAAGTGCGCGGCGAGCCCATGCAAAAGGTTTGGTTAAGATATGCCAGATTCCACCAAATATACAAATGGAACCTAACCATACATGCCCTCCAATT
ATATCTTCCAAATCGTCCACACTAACAATCCATCCTTCTCCCCCAAAGGGAGATTTTAGTAAATAACCAAATATAACACTTGGGCTAAGAGTCAAGTTTG
TAATTTTTCTTACATCCCCCCCTCCTGGAGCCCAGAATACGATTAATCCGGCATGGGCTACATGAGCTCCCAATAGTTTACCAGATAAATTGATAAGTCG
GGCATTCCCGGCCCACCAAGCGAAACCAGTGGTTTCTTGGTCACGACCAGCTAAAGCTAAAGTTCCATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTC
AGGGAATATAAGGTTTTCATGAGGCTGATCTTGAGCCGCCATCCAAGCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAGAAAGTCTCAAATTCC
GGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGGTTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTA
CTGGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGT
TTCTTCGGCTTGAGTTGGGTTAAAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATAGCACATAAC
AGAGCCGCGCCCAGTACACCAGCGACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCCG
CTACACCAAAACTAGGCGCAAAGAACCAACCAGATT