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Detailed information on CNT30235780


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLL3|PETG_LOBMA, E-value = 2e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30170457Brassica oleraceaPistacia vera28.3620.7981.06264reverse complement
CNT3090854Brassica oleraceaSolanum tuberosum11.62294.44108reverse complement
CNT3017135Brassica oleraceaZea mays12.2424.288.6114reverse complement
CNT30608460Brassica oleraceaGossypium raimondii12.5742.3990.6117forward
CNT30360854Brassica oleraceaLactuca sativa11.8220.7290.91110forward

Expression of CNT30235780

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPTITSYFGFLLAALTITSVLFIGLSKIRLI*

Sequence

>CNT30235780
CTAGGTTCTAAGGTCACTTAAAAAAAAGAATCAAAAAACTTTTTTAAAAAAATTTACATGTTTATTCAAAAAAAAGTTCTATGTTTTAACTGAAGTTATA
TAATAGAGTTATTTTTTTTATGTATTATTTTTTCTTATTAATTTCTTAAAGAGTTTTTCAATGAATCAGTTACGTGAATTCTGAATCCTGAGATGGTGCA
GATGCCAAAGACGATGAATTTAGTTTTTTTCTTTTTCTCTATTTTTGTTCATACCACCGATAATGCTTGATAACTCACAAATTTTCAATTTAATTTTTTG
ATTCTTGGAACTAGTATTTGTATCTATCTTTACTTTAAAAAATTTTTTTATTGAAACTTCGGGAAGTACTTTAGAAACATATGTATAAAAAAACATATTT
TATTGAGTCCCTTCATGCCTACTATAACTAGTTATTTCGGTTTTCTACTAGCAGCTTTAACTATAACCTCAGTTCTATTTATTGGTCTAAGCAAAATACG
ACTTATTTGAAATTAATTGAATGAATCTTTTTTGATCAAAAAAGATTTATATGGTATTTCATATGTTCGATAGTTCCTTACCGTGTTAATTACCCAATTT
TGGTCATTGAGATTCGTCGGCAATACAGATTAAGAGCTAGGAATAGATAGTACCTCTCTTTTCTCCCTTTCAAAAATGAAAACAAAAGAAAATTGAAATG
ATTGAATTTCTTTATTTGGAATCGTCTTAGGTCTAATTCCTATTACTTTGGCTGGATTATTCGTAACTGCTTATTTACAATACAGACGTGGTGATCAGTT
GGACTTTTGATTAATTAACACCTCTTTTTTTTTACTGACCTCCTTCTTGCTTTCATATGCGGGAGGTCGAATTCAGATTGCTGCTCAATTATTTGTGAAC
AGTGGAATTTTGACACAATCTAATAAACAAG