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Detailed information on CNT3023562


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004400, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639988Populus trichocarpaNymphaea colorata88.7157.8694.441980forward
CNT30531232Populus trichocarpaEucalyptus grandis10065.995.162232reverse complement
CNT30318007Populus trichocarpaCorylus avellana72.3646.2197.211615forward
CNT30550233Populus trichocarpaIpomoea triloba84.6367.0195.551889reverse complement
CNT30519036Populus trichocarpaJuglans regia99.9672.1596.682231reverse complement
CNT30619309Populus trichocarpaSesamum indicum68.169.1995.261520forward
CNT30283167Populus trichocarpaChenopodium quinoa99.7886.5595.512227reverse complement
CNT3021656Populus trichocarpaCitrullus lanatus10036.8796.242232reverse complement
CNT30526827Populus trichocarpaPhaseolus vulgaris56.8599.8496.611269forward
CNT30632318Populus trichocarpaVigna unguiculata99.1961.8695.532214reverse complement
CNT30202310Populus trichocarpaPisum sativum100.1385.5395.122235reverse complement
CNT30507933Populus trichocarpaNicotiana attenuata88.5397.296.11976reverse complement
CNT30711135Populus trichocarpaGlycine max69.2248.6396.51545reverse complement
CNT3047210Populus trichocarpaPrunus dulcis90.1962.5795.432013reverse complement
CNT30383013Populus trichocarpaTriticum turgidum89.6175.3693.152000reverse complement
CNT30542906Populus trichocarpaBrassica napus75.6399.4195.081688reverse complement
CNT30311297Populus trichocarpaCamelina sativa90.55100.3593.422021reverse complement
CNT3060563Populus trichocarpaArabidopsis lyrata98.57100.4195.272200forward
CNT3083255Populus trichocarpaBrassica juncea97.3681.5494.622173forward
CNT30265711Populus trichocarpaBrassica rapa71.3762.1894.851593reverse complement
CNT30217525Populus trichocarpaKalanchoe fedtschenkoi79.1798.4991.341767reverse complement
CNT30355986Populus trichocarpaLactuca sativa74.3360.7791.921659reverse complement
CNT30434068Populus trichocarpaPapaver somniferum100.2784.5594.592238reverse complement
CNT30574469Populus trichocarpaVitis vinifera64.6578.7296.41443reverse complement
CNT3035495Populus trichocarpaCucumis melo96.6840.9795.782158reverse complement
CNT30583181Populus trichocarpaEchinochloa crusgalli82.4878.5494.461841reverse complement
CNT30176196Populus trichocarpaVigna angularis64.9696.4794.411450forward

Expression of CNT3023562

Peptides detected in this lncRNA

>peptide 1 (32 aa)
GSGGTNRSDMGLNLSGSWQQGHSATYNTPSRI*

>peptide 2 (44 aa)
MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFNSEGLKDR*

>peptide 3 (44 aa)
MCRPSQTPHLTMSSARIGRRSGLGSKKRGSAPPPIHGISKITLK*

>peptide 4 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPGFCSDRRALLLIGAWRLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 5 (53 aa)
MSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGRAVKQKR*

>peptide 6 (92 aa)
LGGDESERHGAESQWIVAARPLCHLQYPVAYLSRLQRILPAARWELYFKAARAALSPRGLGQRHVPPGPRGPYCRSAIGRRAHASHLARILT*

Sequence

>CNT3023562
GGCTCGGGGGGGACGAATCGGAGCGACATGGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCCGTCGCGTATTTAAG
TCGTCTGCAAAGGATTCTACCCGCCGCTCGGTGGGAATTGTACTTCAAGGCGGCCCGCGCGGCTCTTTCACCGCGAGGGCTTGGCCAACGGCACGTGCCT
CCGGGGCCAAGAGGCCCCTACTGCAGGTCGGCAATCGGACGGCGGGCGCACGCGTCGCATCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCC
AACGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAGGTTGGATTACTATTGCGA
CACTGTCATCAGTAGGGTAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTG
CTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT
GACACCTCTAGCTTCAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCC
TTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC
AATGTCTTCCGCCCGGATCGGCCGCCGAAGCGGCCTTGGGTCCAAAAAGAGGGGCAGCGCCCCGCCTCCGATTCACGGAATAAGTAAAATAACGTTAAAG
TAGTGGTATTTCACCTTCGCCGAAGCTCCCACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCC
CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT
AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGATTTCTTCACTTTGACATTCAGAGCACTGGGC
AGAAATCACATTGCGTGAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGTCCGTACCAGTTCTGAGTCGACTGT
TCGACGCCCGGGGAAGGCCCCCGAAGGGGCCGTTCCCAGCCCGTCCCCCGGCCGGCACGCGACGACCCGCTCTCGCCGCGGGAGCAGCTCGAGCAGTCCA
CCGACGGCCGACGGGTTCGGGACTGGGACCCCCGAGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTGCCGACTTCCCTTGCCTA
CATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGGGAGGCACTCGGTCCTCCGGATTTTCAAGGGC
CGCCGGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGACTAAGTCGTTTCCAGGGTGGGCGGGCTGTTAAAC
AGAAAAGATAACTCTTCCCGAGGCCCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAGCCGCCACGTCCCGGTTCAGGAATTTTAACCCGATTCC
CTTTCGAAGCTCGCGCGCGAACGCGCTGTCGGACGGGCTTCCCCGTCTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCC
TCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCCGGGTTTTGCAGCGA
CCGCCGCGCCCTCCTACTCATCGGGGCCTGGCGCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCG
GCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCG
CGCAGTTGGGCACCGTAACCCGGCTTCCGGTT