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Detailed information on CNT30235483


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 7e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402284Brassica oleraceaBeta vulgaris18.4747.4983.65104forward
CNT30166270Brassica oleraceaPistacia vera33.0428.5781.18186forward
CNT30545373Brassica oleraceaBrassica napus68.2162.9598.18384forward
CNT30146878Brassica oleraceaMedicago truncatula20.079.2884.07113forward
CNT3074857Brassica oleraceaBrassica juncea60.7550.9797.95342forward
CNT30648517Brassica oleraceaRosa chinensis32.6836.0882.61184forward
CNT30620550Brassica oleraceaCajanus cajan33.9315.9480.63191forward

Expression of CNT30235483

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFTITHLTIRYRMSEKQKTKGKRNRQFEMK*

Sequence

>CNT30235483
ATTTTGACTGTTTTCCTATCCCAATAAGAGTTGAAAACCTAATAGCCATCGGAAAGTAACCAAGACGAAGAAGCAATATAGAGATTACATGTTCACAATC
ACACATTTGACAATCCGATATAGAATGTCTGAGAAACAGAAAACCAAAGGGAAAAGAAACAGACAATTCGAAATGAAATGAGCAGAGATTATTATGTGAA
TGTCATAGCAAATTAAGCACCGGTGAAGCTTGGTGGTTTGTAGGCGATGAAACTGATGCACTGAACCTGACGGTTGTTGTCAAATCCGATGATCCTGATG
AAAGCGTTAGGGTACTCCGTTTTGCATTCTTGGACTTCCTTCAACACTTGAGCAGAGTCAGTGCATCCGAACAAGGGAAGCTTCCACATTGTCCAGTAAC
GTCCATCATAGTATCCGGGTGGTACTCCGTTTTGCATTCTTGGACTTCCTTCAACACTTGAGCAGAGTCAGTGCATCCGAACAAGGGAAGCTTCCACATT
GTCCAGTAACGTCCATCATAGTATCCGGGTGTGCTTCCGTGCTCACGGTACACAAATCCATGC