Detailed information on CNT30235395


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30311891Brassica oleraceaCamelina sativa63.0521.9693.55186forward
CNT3075086Brassica oleraceaBrassica juncea64.7522.1398.95191forward
CNT30613329Brassica oleraceaArabis alpina64.7528.8589.53191forward
CNT30479769Brassica oleraceaArabidopsis halleri61.3623.7593.37181forward

Expression of CNT30235395

Peptides detected in this lncRNA

>peptide 1 (48 aa)
SSDIYLHAANSSSVASDGSNVIVGLAGDWECRGRLQAGEWSDHGGLSR*

>peptide 2 (45 aa)
LVTFTFMQLTLPPLLAMEVMSLLALRVTGNAEEDFKPVNGATMVA*

Sequence

>CNT30235395
TCTAGTGACATTTACCTTCATGCAGCTAACTCTTCCTCCGTTGCTAGCGATGGAAGTAATGTCATTGTTGGCCTTGCGGGTGACTGGGAATGCAGAGGAA
GACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCTTGAGCCGGTGAGGTAACCACAGCAGCGGAGGAAAGCATAGAGGAAGCCATTACTACTTCTTCTT
CTTCTTCTTTTCTCTTAACTTACTTGTTTGTCTATAGCTTTGGTTATCTATTATATATAACGAGAACCGCAAGAGGAAAAGGCCCTAATAACCAG