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Detailed information on CNT30235198


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30542695Brassica oleraceaBrassica napus99.6470.7292.781094forward
CNT30311010Brassica oleraceaCamelina sativa76.1475.5287.68836forward
CNT3061502Brassica oleraceaArabidopsis lyrata40.2661.4789.37442forward
CNT3075800Brassica oleraceaBrassica juncea59.5696.1893.73654forward
CNT30262720Brassica oleraceaBrassica rapa75.7766.8391.83832forward
CNT30623810Brassica oleraceaDaucus carota75.5948.0982.77830forward
CNT30477817Brassica oleraceaArabidopsis halleri75.577.4886.61829forward
CNT30114615Brassica oleraceaEutrema salsugineum75.584.5184.68829forward

Expression of CNT30235198

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRTQREFIIYSSGACFTRPQNTQTIRSKENHHIVNRDTDV*

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSNVMVLPVRVLTNICIPPRRRKTR*

>peptide 3 (40 aa)
MVSELSTSKVIVFPVNVLTKICMPPRRRKTKWSVDSFWML*

>peptide 4 (40 aa)
MVSELSTSSVIVLPVNVLTKICIPPRSLSTKWRVDSFWML*

Sequence

>CNT30235198
TTTGGCTTATAAAGAAAGAGACATGAGGACGCAAAGATAGTTCACCATTTATTCATCAGGGGCTTGAATTACAAGACCCCAAAACACACAAACCATAAGA
AGCTTATAACGAACGAGACATGAGGACGCAAAGAGAGTTCATCATTTATTCATCAGGGGCTTGCTTTACAAGACCCCAAAACACACAAACCATAAGATCA
AAAGAAAACCACCACATAGTAAACAGAGACACTGACGTTTGATACCACACAGGATAAGAGTTCTAAAAGCCACCACGGAGACGAAGGACCAGGTGAAGGG
TAGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTT
GTCTTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCATCCCA
CCACGAAGCCTGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCGAGCTGTTTGCCAGCGAAGATGAGAC
GCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATAGTGTCCGAACTCTCAACCTCCAATGTGATGGTCTTGCCGGT
AAGGGTCTTGACAAATATCTGCATACCTCCACGTAGACGTAAGACCAGGTGAAGCGTAGATTCTTTCTGGATGTTGTAGTCAGCTAGAGTCCTGCCGTCT
TCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCT
CCACCTCCAAAGTGATAGTCTTTCCGGTCAACGTCTTGACGAAAATCTGCATGCCTCCACGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTTTGGAT
GTTGTAGTCGGCCAAAGTCCTGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGG