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Detailed information on CNT30235037


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-152

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376918Brassica oleraceaArabidopsis thaliana27.6693.4385.63668forward
CNT30312527Brassica oleraceaCamelina sativa28.5781.7588.7690forward
CNT3074551Brassica oleraceaBrassica juncea36.2396.6992.34875forward
CNT30260766Brassica oleraceaBrassica rapa37.89102.3593.55915forward
CNT30612915Brassica oleraceaArabis alpina29.1172.1885.63703forward
CNT30114617Brassica oleraceaEutrema salsugineum28.1286.0685.13679forward

Expression of CNT30235037

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPSLSWIFALTLSMVSELSTSRVMVFPVRVFTKICI*

>peptide 2 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSRVIVFPVKVFTKICMPPRRRKTR*

>peptide 3 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSSVMVLPVKVLTKICIPPRSLSTK*

>peptide 4 (60 aa)
MASGTDLDFAINLLFTSKPWAQINNKKQLRRVMQLHCQPPVLETTLSTTPLRNNIINHLF*

>peptide 5 (29 aa)
NKGTMGSSLISKAHECKQKTITKRMNFQM*

>peptide 6 (29 aa)
MKLFNGQWNRFRFCYKPSFHLQTVGTDKQ*

Sequence

>CNT30235037
AACAAAGGCACAATGGGTTCAAGTCTAATTTCAAAAGCACATGAATGTAAGCAAAAGACTATAACAAAGAGAATGAATTTCCAAATGTAAGAACCACTAT
TAACCAGCTAACAAAGGCATAATGAGACTTGAGCTAGTTCCGAAGAAAAGACATGACCAAAGAGGATGAAGCTTTTTAATGGCCAGTGGAACAGATTTAG
ATTTTGCTATAAACCTTCTTTTCACCTCCAAACCGTGGGCACAGATAAACAATAAGAAGCAATTGAGACGAGTTATGCAACTACACTGTCAACCACCTGT
TTTAGAAACTACACTATCAACCACCCCGTTGAGAAACAACATTATCAACCATCTGTTTTAGAAACCACACTTTTAACCATCTGTTTGAGAAATTAACACT
ATAAGACCACCTGTTGTGATAAAGGCATTGGACTTTAAGCTAAAAGACAGTAACAAAGAGATGAGATTGTAGTTCCACGAGCATATTCAAGCAGAGCGAG
AAAGTCATAAACCACTTTCATTCGTCAGCCTCATTCAGGCTTAAGATTTCAGAAGTATAAGCCAAGCAAACAGGAGATCAGCAAAGGGCACAACATTAAA
TAGCAACGACTCTTGTCACCTGATAATTCTCAATCGAACCATACTGGACTAGCTAGCAAACGGCACAACTTTTATACACGTAGAAAGCACAATAGGGAAA
CATAAAGAGCAACGACTATATTATAATATATTTCACAATAGAGAAATCTGATTTGGTTCATAACGGAAGAGAAAAACAAGGACGCAAAGCGAGTTCATCA
ATTATTCATAAGGGGCTTTATAAGACCCCAAAACATAAACCATAAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGT
TTTAGAAACCTCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCGGC
GAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGTGTGATG
GTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCATACCACCACGGAGCCTGAGCACCAAGTGAAGAGTTGATTCTTTCTGGATGTTATAGTCAGCCAAAG
TACGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGGATTTTGGCTTTCACGTTGTCAATGGT
GTCGGAACTCTCCACCTCTAGAGTGATCGTCTTTCCTGTTAAAGTCTTCACGAAGATTTGCATGCCTCCACGTAGACGCAAGACCAGGTGAAGGGTCGAC
TCTTTCTGAATGTTGTAGTCGGCCAAGGTTCTCCCGTCTTCCAACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCT
GGATCTTTGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTCCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAAATTC
ACAAACAGCAGCGATCAATTCCGAAAACAATCACTAATCACAGTATAAACATTAACCAAGGATAATAAGTCAACTAATTAAATAGAATCAAATCATCAAC
GAACCATTCAGATCAAATTGCGAACAGCAATCACAGATCCACGAATTGATACAAAATCAATTAGATGAAAATCACAGATCGACGCTTATCAACATAGATC
CACGACTACTAACAATCACTAATCAGATCCTAACAAGAAACTGACCGTAGATCAACAAAGGAAACAACAGATCGACGCGTAACAACGAAGATGAACACAC
AAGACGATTTTTAACGACGAATCAAAACTCAACGAGTAGAGAACAGCTCGCGATTCAAACGAAACAACTAATCGAAGAAGAGATCAAGAAGCTCACCTTG
ATCGAAGCTTGAGATTGAGATAGAATTTGATTATGATTATCGAATTTCGAAACTTTTAATTTGTGAAGGAGTTGAGGTCTCAAAGGTTTGATTTATACAG
GATGAAGCCGACCAAGTCATGAGAGAGGTAAAAAGGCGGTCAAGCAATAACCAATACAATGTGGACACGTTTCTGTTGCCTTAGTTTTAGGTAAAGGAAA
AGTATTTGTCCTTTGAGTTGATAACTACGAGCCGTGTACCGGCCACCAACCTGTATTTTAACGTCGTTTCTCGACAACCACACTTTCTAACGGCCGTAAC
AGAAGCCGGACGTTGTGAGTTAACGATCGTTACGGAAGATGCTATTATTCTTTCCTTTCAACGGTGGAGCTGAAAATGTCAATAATTGAAACCTTGGGCC
CCTCCCTGTCGAAGC