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Detailed information on CNT30234927


BLAST search results

BLAST vs Swiss-Prot:
sp|P04782|CB24_PETSP, E-value = 8e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513343Brassica oleraceaJuglans regia45.460.6383.29365forward
CNT30542600Brassica oleraceaBrassica napus88.31100.1499.86710forward

Expression of CNT30234927

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

>peptide 2 (54 aa)
MGCLMGPLAWLRSSSLSHGRFQGLLMLQGRREPLLRRPLRLSAERNKTFIGCCL*

>peptide 3 (56 aa)
MVSKILQRSLTSDNSLNKESKHREHSQSSVLDLLHLQLREGLWVSSQTQRLREDAA*

Sequence

>CNT30234927
TTTTGTAGAAATAACTTTTGCAATTGAATGATAACAAAAAAACATAAATCCATTTCCATTTAGTTCTACGACACAGTTGATAAGACAAAGAGTTATTGGA
TTAATGGTAAATCATACAAATACTTGCAAATTTTACATCTAAACAACATCTCTTTCTCCTCTTACACTCACAAGAAGCAAATACTGAAGCAAATTACAGA
TAAAAACATCGCTCACTTTCCGGGAACGAAGTTGGTAGCAAAGGCCCATGCATTGTTGTTAACTGGATCAGCCAAATGGTCAGCAAGATTCTCCAAAGGT
CCCTTACCAGTGACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGATCTCCTTCACCTTCAACTCCGCGAAGGCCT
CTGGGTCAGTAGCCAAACCCAACGGCTCCGGGAAGACGCAGCCTAGGGCTCCGAGCATGGCCCACCTGCAGTGGATAACTTCTAGCTCACGGTTCCTCGC
GAACGTCTCGGGATCGGCTGAGAGACCTGCGGTGTCCCATCCGTAGTCTCCTGGGAACTCTCCGGTAAGGTAGCTCGGTGGCTCGCCGGAGAATGGGCCC
AAGTACTTGACTCTCTCGGATCCGTACCATGGGCTGCCTGATGGGCCCTTTGGCTTGGCTACGGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTT
CTGATGCTGCAGGGGAGGAGAGAGCCATTGTTGAGGCGGCCATTGCGGTTGAGTGCTGAGCGAAATAAAACGTTTATTGGTTGTTGTTTATGAGCCAAGA
GATG