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Detailed information on CNT30234848


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 6e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378978Brassica oleraceaManihot esculenta26.4414.8285.29170forward
CNT30404043Brassica oleraceaBeta vulgaris27.5316.0583.62177forward
CNT30200636Brassica oleraceaPisum sativum25.9735.9986.83167forward
CNT30539322Brassica oleraceaBrassica napus96.2798.4199.35619forward
CNT30171029Brassica oleraceaTrifolium pratense30.6433.6887.31197forward
CNT30263808Brassica oleraceaBrassica rapa49.9269.3399.69321forward
CNT30611387Brassica oleraceaArabis alpina30.4871.5394.9196forward
CNT30337328Brassica oleraceaCynara cardunculus30.1728.8385.05194forward

Expression of CNT30234848

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MVSKILQRSLTSDNSLNKESKHREHSQSSVLDLLHLQLREGLWVSSSVARRRMGPST*

>peptide 2 (31 aa)
MGCLMGPLAWLRSSSLSHGRFQGLLMLLGKA*

Sequence

>CNT30234848
TTGAATGATAACAAAAAAACATAAATCCATTTCCATTTAGTTCTACGACACAGTTGATAAGACAAAGAGTTATTGGATTAATGGTAAATCATACAAATAC
TTGCAAATTTTACATCTAAACAACATCTCTTTCTCCTCTTACACTCACAAGAAGCAAATACTGAAGCAAATTACAGATAAAAACATCGCTCACTTTCCGG
GAACGAAGTTGGTAGCAAAGGCCCATGCATTGTTGTTAACTGGATCAGCCAAATGGTCAGCAAGATTCTCCAAAGGTCCCTTACCAGTGACAATAGCTTG
AACAAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGATCTCCTTCACCTTCAACTCCGCGAAGGCCTCTGGGTCAGTAGCTCGGTGGCTC
GCCGGAGAATGGGCCCAAGTACTTGACTCTCTCGGATCCGTACCATGGGCTGCCTGATGGGCCCTTTGGCTTGGCTACGGTCTTCCTCATTGTCACACGG
CCGCTTCCAAGGACTTCTGATGCTGCTGGGGAAAGCTTGACGGCCTTTCCGGCGAAGGCAGGGGAGGAGAGAGCCATTGTTGAGGCGGCCATTGCGGTTG
AGTGCTGAGCGAAATAAAACGTTTATTGGTTGTTGTTTATGAG