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Detailed information on CNT30234810


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Brassica oleraceaOryza sativa74.51893.97564forward
CNT30678383Brassica oleraceaSetaria viridis15.4634.2188.89117reverse complement
CNT30524653Brassica oleraceaSetaria italica43.227.394.5327reverse complement
CNT30550263Brassica oleraceaIpomoea triloba97.096.3793.88735reverse complement
CNT30632593Brassica oleraceaVigna unguiculata100.1344.9192.61758reverse complement
CNT30504983Brassica oleraceaNicotiana attenuata75.4331.3694.05571reverse complement
CNT30302067Brassica oleraceaTriticum aestivum72.9239.2994.2552reverse complement
CNT30221055Brassica oleraceaHordeum vulgare72.3972.394.34548reverse complement
CNT30400948Brassica oleraceaTriticum turgidum74.522.5693.97564forward
CNT30585815Brassica oleraceaMusa acuminata73.8423.0391.41559reverse complement
CNT30553653Brassica oleraceaOryza glaberrima23.12993.14175reverse complement
CNT30147389Brassica oleraceaMedicago truncatula92.675.7893.44701forward
CNT30440683Brassica oleraceaAegilops tauschii46.536.4493.75352reverse complement
CNT30248040Brassica oleraceaAvena sativa74.541.993.97564forward
CNT30662061Brassica oleraceaTriticum dicoccoides74.529.3994.33564forward
CNT3081478Brassica oleraceaBrassica juncea41.0826.8699.36311reverse complement
CNT30143344Brassica oleraceaLolium perenne74.525.2194.15564forward
CNT3016633Brassica oleraceaZea mays74.529.5194.15564forward
CNT30229838Brassica oleraceaAnanas comosus50.9987.1392.49386forward
CNT30218527Brassica oleraceaKalanchoe fedtschenkoi99.2150.4493.74751forward
CNT3067373Brassica oleraceaLeersia perrieri22.3255.9691.72169reverse complement
CNT30655299Brassica oleraceaRosa chinensis73.3219.5694.23555reverse complement
CNT30203595Brassica oleraceaHelianthus annuus98.5540.7292.23746reverse complement
CNT30683015Brassica oleraceaTriticum urartu73.8456.7593.92559forward
CNT30721611Brassica oleraceaTriticum spelta29.5948.5995.09224forward
CNT30369805Brassica oleraceaOryza glumipatula67.6435.791.6512reverse complement
CNT30154718Brassica oleraceaPrunus persica73.4580.2391.73556reverse complement
CNT30420891Brassica oleraceaPapaver somniferum22.066.2288.02167forward
CNT3037914Brassica oleraceaCucumis melo47.4216.8785.52359reverse complement
CNT30147862Brassica oleraceaBrachypodium distachyon19.0254.7595.14144forward
CNT30104484Brassica oleraceaOryza rufipogon34.7498.591.63263forward
CNT30575706Brassica oleraceaOryza barthii69.4821.5892.97526reverse complement
CNT30582488Brassica oleraceaEchinochloa crusgalli74.546.4694.15564reverse complement
CNT30116696Brassica oleraceaOryza nivara74.514.2294.15564forward
CNT30604605Brassica oleraceaOryza punctata11.2336.889.4185forward

Expression of CNT30234810

Peptides detected in this lncRNA

>peptide 1 (96 aa)
LRRSVDFTPPHEIPLSSVSLKFSGFESIPPLFDDFHFQPDEPPTCPLRLVIPKNTCPPRFTAAAGTELAGASSSSHVMIAHSTKELYERNCPSSLT*

Sequence

>CNT30234810
TCCTTCGTAGATCCGTAGATTTCACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTTCAGTGGTTTCGAAAGCATTCCGCCACTTTTTGA
CGACTTTCACTTTCAACCCGATGAACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCCCCGTTTTACCGCGGCTGCTGGCACG
GAGTTAGCCGGGGCTTCTTCCTCGAGTCATGTCATGATCGCGCACTCGACGAAAGAGCTTTACGAGCGGAATTGCCCTTCTTCCCTCACGTAATATTGCT
GGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCGGTGTGGCTGATCGTCCGAAAAGAC
CAGCTAAGCATCATCGGCTTGGTCAGCCTTTACCTAACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTCTAGCTTTCTTCGGGATTTAGC
CCGAACTGTTCGGCAGATTCCCACGCCTTACGCACCCGTTCGCCACTTTGTTCACAACTCTTCCCACCTCTTGGGTGAGACAAGCTACCTTGAGCTAGGA
GCCTCTATTCCTTCTGACTAGCTCCTAGGGAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAGGATCAAACTCTTCTT
TTGACTATGATTGGGCCCTGCAGTGGTAGAACCTCGTGAACCGGGCGTACTTACTTC