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Detailed information on CNT3023479


BLAST search results

BLAST vs Swiss-Prot:
sp|P51414|RL261_ARATH, E-value = 8e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522907Populus trichocarpaSetaria italica24.7915.7583.1589forward
CNT30194917Populus trichocarpaPisum sativum23.1229.1284.3483forward
CNT3044269Populus trichocarpaPrunus dulcis69.9242.0481.27251forward
CNT3082886Populus trichocarpaBrassica juncea19.2226.8586.9669forward
CNT30230974Populus trichocarpaAnanas comosus29.8116.7282.24107forward
CNT30714885Populus trichocarpaMalus domestica golden43.1831.8384.52155forward
CNT30355705Populus trichocarpaLactuca sativa50.749.8682.97182forward

Expression of CNT3023479

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MMSSAVNLVPFSLSPTARPFALRSNRDFLSLSSLNFVITTLDALIPTLTVDPFTFSRVILSMWMTHFRR*

Sequence

>CNT3023479
CATATCCAAAAAGTTCTCTCTGGAAATAGATAAATAATTCAAAACCTTGCCGACAAAATATTTCATTTCAAACAAACCGATCAGTCCACACTCTGCATGA
TGTCCTCGGCAGTGAACTTAGTGCCCTTCTCTTTGTCTCCAACAGCACGTCCCTTTGCCTTGCGATCCAATAGAGACTTCCTATCCTTATCAAGCCTCAA
CTTCGTGATAACAACCTTGGACGCGTTGATACCGACATTAACTGTTGACCCATTCACCTTCTCACGTGTAATCCTCTCGATGTGGATGACCCACTTTCGA
CGATAAACCTGAACCACCTTGCCCTCGCGTCCTTTGTAGGTCCCACGAACAACCTGGAC