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Detailed information on CNT30234693


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 3e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30123772Brassica oleraceaPhyscomitrium patens40.541.3685.88177forward
CNT30171121Brassica oleraceaTrifolium pratense43.9421.8787.5192forward
CNT30260575Brassica oleraceaBrassica rapa49.4357.4593.52216forward
CNT30610069Brassica oleraceaGossypium raimondii44.8544.4488.27196forward

Expression of CNT30234693

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MIINLLTPSLSGDEVGGKGPCIVVDWISQMVSKILQRSLSGDDSLNEESKHREHSQPSVLDLLHLQLRESFWVGSH*

Sequence

>CNT30234693
CTGTTGAGAAATGATAATTCAGTTCAATTTGAGTAATAAGATAAAACGCCAACACAGTTGAGAAAAAGAGGTTCGGTTTCTGATAAAATCATACAAAGAT
ACGACAAAGGAAGTTTCACAAATATACAAACAAACTCTCTTTCTCTTCTGCTCACTCGCATGATAATTAACCTTTTAACTCCTTCACTTTCCGGGGACGA
AGTTGGTGGCAAAGGCCCATGCATTGTTGTTGACTGGATCAGCCAAATGGTCAGCAAGATTCTCCAACGGTCCCTTTCCGGTGACGATAGCCTGAACGAA
GAATCCAAACATAGAGAACATAGCCAACCTTCCGTTCTTGATCTCCTTCACCTTCAACTCCGCGAAAGCTTCTGGGTCGGCAGCCATTAGAAATTTTCTT
GATCTTTTTTAGTTTTTGTGTTTTTTTTTGTGACTGG