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Detailed information on CNT30234601


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9THV5|RPOC2_SINAL, E-value = 6e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3045209Brassica oleraceaPrunus dulcis22.9337.2493.52108reverse complement
CNT30286499Brassica oleraceaTriticum aestivum39.9214.4889.89188forward
CNT30220823Brassica oleraceaHordeum vulgare27.64.1186.92130forward
CNT3085458Brassica oleraceaVigna radiata29.9439.8390.07141forward
CNT30555951Brassica oleraceaOryza glaberrima50.7429.1189.12239forward
CNT30314046Brassica oleraceaCamelina sativa31.633.8999.33149forward
CNT3082978Brassica oleraceaBrassica juncea31.631.8499.33149forward
CNT30142437Brassica oleraceaLolium perenne22.935.786.11108forward
CNT30687807Brassica oleraceaTriticum urartu20.592.8186.697reverse complement
CNT30355329Brassica oleraceaLactuca sativa63.0641.8390.57297forward
CNT30155137Brassica oleraceaPrunus persica30.7921.0492.41145forward
CNT3025537Brassica oleraceaPopulus trichocarpa18.2621.5587.2186forward
CNT30149874Brassica oleraceaBrachypodium distachyon62.8522.9688.85296forward
CNT30574605Brassica oleraceaOryza barthii39.9211.0589.89188forward
CNT30117202Brassica oleraceaOryza nivara50.3212.7288.61237forward
CNT30727046Brassica oleraceaLupinus angustifolius50.5329.4690.76238forward

Expression of CNT30234601

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MNSQPAHCKNWIGPIYSHWVLLKRSTKFVSCSKESKRPLLDLGCVMYMPSRSDLLIG*

Sequence

>CNT30234601
TTTTAATTGAAAACTAAATGGGTCAGAAAAAGAGCAAGTACAAAAATGAGTAATAACCCCCAATAGAGACTGGTACGATTTAATTCAACATTTTGTTCGT
TCGGATTTGATTGTGTCATAGCTCTATAAATAATTGAATTCGGTTTATCGTTGGATGAACTGCATTGCTGATATTGACCCCAAAAAAGAAACGGTAGGTA
CAGCTAGTCCATGAACAGCCAACCAGCGCACTGTAAAAATTGGATAGGTCCTATCTATAGTCATTGGGTCCTCCTAAAAAGATCTACTAAATTCGTGAGT
TGTTCCAAAGAATCAAAACGGCCTTTACTTGATCTAGGATGTGTGATGTATATGCCATCCCGAAGTGATCTATTAATCGGCTAATAAGTCGTTTAATAGA
AGTTCCATCTATCACTTTATTGTGAAATACCAGATTGGCCCGTTCCGCCATAAGTACCTCCATATTCTGCT