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Detailed information on CNT30234565


BLAST search results

BLAST vs Swiss-Prot:
sp|B1A931|PSBC_CARPA, E-value = 3e-123

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30607747Brassica oleraceaGossypium raimondii50.5580.9593.5323forward
CNT30120788Brassica oleraceaCitrus clementina15.8147.6493.07101reverse complement
CNT30148151Brassica oleraceaBrachypodium distachyon32.7114.9389.95209forward

Expression of CNT30234565

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MEKILQEFRVPEVHDKYRQSPKLQKKLSEVLQIQSMERCL*

>peptide 2 (37 aa)
ITKYNTWAKSQVCNFSYIPPSWSPGIIYAPKIESLEY*

Sequence

>CNT30234565
AATAACCAAATATAACACTTGGGCTAAGAGTCAAGTTTGTAATTTTTCTTACATCCCCCCCTCCTGGAGCCCAGGTATCATATACGCCCCCAAAATAGAG
AGCCTTGAATACTAGAAGAAAAGCACCTACACCTAACAAAATTAAGTGAATACCCAAAATGGTGGTCATTTTATTTCTATCTTTCCATACATAACCGAAA
AATGGAAAAGATTCTTCAAGAGTTTCGGGTCCCAGAAGTGCATGATAAATACCGCCAAAGCCCAAAACTGCAGAAGAAATTAAGTGAAGTACTCCAGATA
CAAAGTATGGAAAGGTGTCTATAACTTCTCCCCCAGGACCTACCCCCCAGCCTAAAGTGGCTAGGTGGGGAAGTAAAATCAATCCTTGTTCATACATGGG
CTTTTCAGGTACAAAATGAGCTCCCAATAGTTTACCAGATAAATTGATAAGTCGGGCATTCCCGGCCCACCAAGCGAAACCAGTGGTTTCTTGGTCACGA
CCAGCTAAAGCTAAAGTTCCATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCTTGAGCCGCCATCCAA
GCGCGAATACCTTCGTTTAAAAGAATATTTTTAGTATAG