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Detailed information on CNT30234560


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530811Brassica oleraceaEucalyptus grandis88.2549.6593.761683reverse complement
CNT30374695Brassica oleraceaArabidopsis thaliana67.3341.1497.351284forward
CNT3021662Brassica oleraceaCitrullus lanatus89.241.8593.421701reverse complement
CNT30730436Brassica oleraceaCorchorus capsularis73.89100.0795.031409reverse complement
CNT30632321Brassica oleraceaVigna unguiculata89.271.7792.531701reverse complement
CNT30711135Brassica oleraceaGlycine max88.3153.0193.111684reverse complement
CNT3047192Brassica oleraceaPrunus dulcis85.5348.0692.71631reverse complement
CNT30544747Brassica oleraceaBrassica napus89.0466.399.591698forward
CNT30312195Brassica oleraceaCamelina sativa89.0968.1298.471699forward
CNT3076930Brassica oleraceaBrassica juncea89.0449.4299.471698reverse complement
CNT30262619Brassica oleraceaBrassica rapa10079.7299.631907forward
CNT30206613Brassica oleraceaHelianthus annuus59.9965.8294.321144reverse complement
CNT30356368Brassica oleraceaLactuca sativa54.980.9194.751047reverse complement
CNT30434075Brassica oleraceaPapaver somniferum89.3663.4992.191704reverse complement
CNT3027145Brassica oleraceaPopulus trichocarpa58.7368.4695.181120forward
CNT3035495Brassica oleraceaCucumis melo89.232.393.241701reverse complement
CNT30115258Brassica oleraceaEutrema salsugineum55.48100.0997.731058forward

Expression of CNT30234560

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDRHRRPLRPGSRPRFCSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 2 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRLCTREGSSQSASLRLTGLLTR*

>peptide 3 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRTLRPRCL*

>peptide 4 (34 aa)
MGSPQADALSTQMPRHAVRRVLQTTIKAATSPRA*

>peptide 5 (76 aa)
GKLPKEPFPVRPPADTRRSALATLAAQAARQQSTGSELGPPSPALRANPFPEVTDPFCRLPLPTLFHRPEAVKQKR*

>peptide 6 (72 aa)
GKAPERAVPSPSPGRHEAVRSRHVSGSSSPPTVDGFGTGTPEPSPQSQSFSRSYGSILPTSLAYIVPSTRGC*

Sequence

>CNT30234560
GGGAAAGCTCCCGAAAGAGCCGTTCCCAGTCCGTCCCCCGGCCGACACGAGGCGGTCCGCTCTCGCCACGTTAGCGGCTCAAGCAGCCCGCCAACAGTCG
ACGGGTTCGGAACTGGGACCCCCGAGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAAGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCC
ATCGACCAGAGGCTGTTAAACAGAAAAGATAACTCTTTCCGGAATTCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGTT
CCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCATAAGCGCTATCAGACGGGTTTCCCCCGACTCTTAGGATCGACTAACCCATGTGCAAGTGCCG
TTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCGGCACCGACGGCCGCTCCGCCCGGGCTCG
CGCCCTAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCAT
TTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCT
TTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCT
CTCGATTCCGTGGGATGGCTCAACAAAGCAGCCACCCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGACGTTGCGTCCCCGATGCCTCTAATCA
TTGGCTTTACCCGATAGAACTCGTTTCCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCT
ATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTT
CGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGCTGTGCACCCGTGAGGGATCCAGCCAATCAGCTTCCTTACGC
CTTACGGGTTTACTCACCCGTTGACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGACGCCCTGAG
CACGCAGATGCCGAGGCACGCCGTGAGGCGCGTGCTGCAGACCACGATTAAGGCAGCGACGTCTCCGCGGGCGTAACGAAAGCCCGGGCTTAGGTCACCA
CCTTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGCTCCGTTCCGCATCCGACCGGGACGCATCGCCGGCCCCCATCCGCTTCCCT
CCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCATATTTAGCCT
TGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCACGACGGGGCTCTC
ACCCTCTCTGGCGCCCCTTTCCAGGGAACTTGGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGAACGCCGAAGACGTCCGATTTTCAA
GCTGGGCTCTTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATGCTTAAACTCAGCGGGTGATCCCGCC
TGACCTG