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Detailed information on CNT30234519


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528820Brassica oleraceaEucalyptus grandis6.7728.7989.4776reverse complement
CNT3021511Brassica oleraceaCitrullus lanatus9.4531.8390.57106forward
CNT3077544Brassica oleraceaBrassica juncea34.0523.9399.74382forward
CNT30154398Brassica oleraceaPrunus persica6.8627.890.9177forward

Expression of CNT30234519

Peptides detected in this lncRNA

>peptide 1 (40 aa)
IYFNHFRTPLYILMLYIMFRTLKILSFIYDLISRALPHKI*

>peptide 2 (42 aa)
MFWNQNKILKYPLGIKKFGIRLSFSRQERNIFPMKYRNKKIK*

>peptide 3 (42 aa)
MNCQMTHYSDKEIFFSFLFDIYMSMPVKKGKIYYLYLIQYNI*

>peptide 4 (29 aa)
HLLQPFPNTFIYLNVIYYVQDAQNSIIYL*

>peptide 5 (32 aa)
MKFIRMKFKKFEIIDFRMKFFLYRKLKKVIES*

Sequence

>CNT30234519
TCATCTACTTCAACCATTTCCGAACACCTTTATATATCTTAATGTTATATATTATGTTCAGGACGCTCAAAATTCTATCATTTATTTATGATTTGATTTC
TCGCGCACTGCCCCATAAAATTTAACCTTTAGAATTTCATTTAATTGGTTTCGAAGATCAAAATATTTGATTTTATTGGTCCTTACTTAGGTAAACGCAT
CAACTCAAATTGTTTCTTCCTTGCTATTAGTTTCTTAATAAGTAGTTGAATCTAAATCATGAATTGTCAGATGACTCATTACTCAGATAAAGAAATCTTT
TTTTCTTTTTTATTTGATATCTACATGTCCATGCCGGTAAAAAAAGGGAAAATTTATTATTTATATCTAATTCAATACAATATTTAAATAAAATAATAGC
AAACTGTAAATGAGAGTTTCTTTCTCACATACACCTTCAATCCCATTACATTGTCATCTTGTAAGCATCAATATGGAAATATTTGATTGATATCTGAAGC
CATTCTTTATGATTCGATTTTTTTATTCTTAATACAATTTGATTCTTATACAACTAGAATTTAGGCTCTTGTTATGTTCTGGAATCAAAACAAGATATTG
AAATACCCTTTAGGTATTAAAAAATTTGGAATAAGACTTTCTTTCTCTAGGCAGGAACGCAATATATTTCCTATGAAATATAGAAACAAGAAGATTAAAT
AAGAGATATCGACAGATTTCCGAATAAAAAAATATGAAATAAAACAAATCTACTGTTTCAATTTTATCTCTATCGAATTTGAATATCAGAATAGTGGATA
TAGTCATGATTCGACGGGTTAGGTCCACTTACTTTTTCTTTTGGATTTGTTGATTTCTAATCTATCGAAAAAGGGAAACAACGAATATCTATTTGGCGAT
TCAAAAGCCGACTTATTATTATTCATTGTATTATAATATCAAAATGTTCAATTTGATTTTCTAAATTACTCTCTCACTTTATTATTAGTTATTATTAAAA
TGAAATTCATTAGAATGAAATTCAAAAAATTTGAAATTATAGACTTTCGAATGAAATTTTTCCTATATAGAAAGTTAAAGAAAGTAATAGAAAGTTAAAG
AAAGTAAAAGCCCTTTATCGGA