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Detailed information on CNT30234371


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616366Brassica oleraceaSesamum indicum27.0152.2486.71444forward
CNT3074284Brassica oleraceaBrassica juncea42.27100.2994.53695forward
CNT30260671Brassica oleraceaBrassica rapa42.09103.1391.76692forward

Expression of CNT30234371

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPSLSWIFALTLSMVSELSTSRVMVFPVRVFTKICI*

>peptide 2 (59 aa)
ASGTDLDFAINLLFTSKPWAQINNKKQLRRVMQLHCQPPVLETTLSTTPLRNNIINHLF*

>peptide 3 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSSVMVLPVKVLTKICIPPRSLSTK*

Sequence

>CNT30234371
GGCCAGTGGAACAGATTTAGATTTTGCTATAAACCTTCTTTTCACCTCCAAACCGTGGGCACAGATAAACAATAAGAAGCAATTGAGACGAGTTATGCAA
CTACACTGTCAACCACCTGTTTTAGAAACTACACTATCAACCACCCCGTTGAGAAACAACATTATCAACCATCTGTTTTAGAAACCACACTTTTAACCAT
CTGTTTGAGAAATTAACACTATAAGACCACCTGTTGTGATAAAGGCATTGGACTTTAAGCTAAAAGACAGTAACAAAGAGATGAGATTGTAGTTCCACGA
GCATATTCAAGCAGAGCGAGAAAGTCATAAACCACTTTCATTCGTCAGCCTCATTCAGGCTTAAGATTTCAGAAGTATAAGCCAAGCAAACAGGAGATCA
GCAAAGGGCACAACATTAAATAGCAACGACTCTTGTCACCTGATAATTCTCAATCGAACCATACTGGACTAGCTAGCAAACGGCACAACTTTTATACACG
TAGAAAGCACAATAGGGAAACATAAAGAGCAACGACTATATTATAATATATTTCACAATAGAGAAATCTGATTTGGTTCATAACGGAAGAGAAAAACAAG
GACGCAAAGCGAGTTCATCAATTATTCATAAGGGGCTTTATAAGACCCCAAAACATAAACCATAAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTG
AACCAACAAAGGACAAGAGTTTTAGAAACCTCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGACCA
TCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGC
TCTCCACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCATACCACCACGGAGCCTGAGCACCAAGTGAAGGGTCGACTCTTTCTG
AATGTTGTAGTCGGCCAAGGTTCTCCCGTCTTCCAACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTT
GCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTCCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAAATTCACAAACAG
CAGCGATCAATTCCGAAAACAATCACTAATCACAGTATAAACATTAACCAAGGATAATAAGTCAACTAATTAAATAGAATCAAATCATCAACGAACCATT
CAGATCAAATTGCGAACAGCAATCACAGATCCACGAATTGATACAAAATCAATTAGATGAAAATCACAGATCGACGCTTATCAACATAGATCCACGACTA
CTAACAATCACTAATCAGATCCTAACAAGAAACTGACCGTAGATCAACAAAGGAAACAACAGATCGACGCGTAACAACGAAGATGAACACACAAGACGAT
TTTTAACGACGAATCAAAACTCAACGAGTAGAGAACAGCTCGCGATTCAAACGAAACAACTAATCGAAGAAGAGATCAAGAAGCTCACCTTGATCGAAGC
TTGAGATTGAGATAGAATTTGATTATGATTATCGAATTTCGAAA