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Detailed information on CNT30234332


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 9e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376781Brassica oleraceaArabidopsis thaliana34.5376.4887.41413forward
CNT30506303Brassica oleraceaNicotiana attenuata39.2157.4185.29469forward
CNT3094751Brassica oleraceaSolanum tuberosum37.7939.2786.28452forward
CNT30541492Brassica oleraceaBrassica napus10095.9997.241196forward
CNT3074281Brassica oleraceaBrassica juncea61.6262.0994.03737forward
CNT30260763Brassica oleraceaBrassica rapa58.28101.1692.11697forward

Expression of CNT30234332

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPSLSWIFALTLSMVSELSTSRVMVFPVRVFTKICI*

>peptide 2 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPRSLRTK*

Sequence

>CNT30234332
AATTCTCAATCGAACCATACTGGACTAGCTAGCAAACGGCACAACTTTTATACACGTAGAAAGCACAATAGGGAAACATAAAGAGCAACGACTATATTAT
AATATATTTCACAATAGAGAAATCTGATTTGGTTCATAACGGAAGAGAAAAACAAGGACGCAAAGCGAGTTCATCAATTATTCATAAGGGGCTTTATAAG
ACCCCAAAACATAAACCATAAGAAGTATTTAAAAGAAACGCAGACACTGACTTTTGAACCAACAAAGGACAAGAGTTTTAGAAACCTCCACGGAGACGGA
GGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTCCTGCCATCCTCCAACTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGG
TGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTATCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATCGTCTTTCCGGTAAGGGTCTTGACG
AAGATCTGCATACCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTCCCGTCTTCCAACTGCTTTC
CAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGT
GATGGTCTTCCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAAATTCACAAACAGCAGCGATCAATTCCGAAAACAATCACTAATCACAGTATAAACAT
TAACCAAGGATAATAAGTCAACTAATTAAATAGAATCAAATCATCAACGAACCATTCAGATCAAATTGCGAACAGCAATCACAGATCCACGAATTGATAC
AAAATCAATTAGATGAAAATCACAGATCGACGCTTATCAACATAGATCCACGACTACTAACAATCACTAATCAGATCCTAACAAGAAACTGACCGTAGAT
CAACAAAGGAAACAACAGATCGACGCGTAACAACGAAGATGAACACACAAGACGATTTTTAACGACGAATCAAAACTCAACGAGTAGAGAACAGCTCGCG
ATTCAAACGAAACAACTAATCGAAGAAGAGATCAAGAAGCTCACCTTGATCGAAGCTTGAGATTGAGATAGAATTTGATTATGATTATCGAATTTC