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Detailed information on CNT30234210


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30160120Brassica oleraceaPistacia vera78.2969.3586.66862forward
CNT3074201Brassica oleraceaBrassica juncea81.4798.0396.54897forward
CNT30614135Brassica oleraceaArabis alpina67.7647.8291.55746forward
CNT30647369Brassica oleraceaRosa chinensis37.645.784.3414forward
CNT30355521Brassica oleraceaLactuca sativa65.0375.0586.03716forward
CNT30100761Brassica oleraceaOryza rufipogon31.3460.2186.96345forward
CNT30580076Brassica oleraceaEchinochloa crusgalli36.0630.0186.65397forward
CNT30116111Brassica oleraceaOryza nivara28.7936.2387.7317forward
CNT30113122Brassica oleraceaFicus carica43.8758.1984.89483forward

Expression of CNT30234210

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MSVVNKKKSLKTHQSFFKQKEQSMREVSSFGTLLDCSLGDLGTGWVLLVNTLDDTNSNRLSHVPNSETSQWWVL*

>peptide 2 (29 aa)
MVGTLRKSQQPWAWLESSSPYQHLHSSKT*

>peptide 3 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSLTATFLTLNPTLSPGSASTRDSWCISTDLTSVVNPEGANVTTMPGLSIPVSTRPTGTVPIPPIL*

>peptide 4 (81 aa)
MTPTATVCLMSLTAKRPNGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPDRLSILVRISENLTAMWEVWQSSTGA*

Sequence

>CNT30234210
GATAAGAACATGCAACTTGAATAAACATTAAACGAACAATAGAAAGCATTAGGCAAAATTATCCAGAAACTGCATAACTAAAACCATAAGTAACAGAGAC
ATCAAAAAAAGGTAGAGAGATGAGTGTCGTAAACAAAAAAAAAAGCCTCAAAACACATCAAAGTTTTTTTAAGCAAAAAGAACAAAGCATGAGAGAAGTC
TCATCATTTGGCACCCTTCTTGACTGCAGCCTTGGTGACCTTGGCACCGGTTGGGTCCTTCTTGTCAACACTCTTGATGACACCAACAGCAACCGTCTGT
CTCATGTCCCTAACAGCGAAACGTCCCAATGGTGGGTACTCTGAGAAAGTCTCAACAACCATGGGCTTGGTTGGAGTCATCTTCACCATACCAGCATCTC
CATTCTTCAAAAACTTAGGCTCCTTCTCGATCTCTTTACCAGATCGCCTGTCAATCTTGGTGAGGATCTCAGAGAACTTGACTGCAATGTGGGAGGTGTG
GCAATCAAGCACTGGGGCGTAACCGTTACCGATCTGACCAGGGTGGTTCATGATGATGACCTGGGAAGTGAAGTTAGCAGCACCCTTGGCAGGGTCATCC
TTAGAGTTGGATGCAACATACCCACGCTTAAGATCCTTGACGGCAACGTTCTTAACATTGAATCCGACGTTGTCACCTGGAAGTGCCTCCACAAGAGACT
CGTGGTGCATCTCAACGGACTTGACCTCAGTGGTCAACCCTGAAGGAGCGAATGTGACAACCATGCCGGGCTTGAGCATACCAGTCTCAACACGACCCAC
TGGCACCGTTCCAATACCACCGATCTTGTAGACATCCTGAAGTGGTAGACGCAGGGGCTTGTCTGAAGGCCTCTTTGGCTCGTTGATCTGGTCAAGAGCC
TCAAGGAGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAATCCGGAGATGGGGACGAATGGGATTTTGTCAG
GGTTGTACCCAACCTTCTTCAAGTAGGAAGACACCTCCTTGATGATCTCATCGTACCTAGCCTTGGAGTACTTGGGGGTTGTTGCATCCATCTGGAACAA
G