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Detailed information on CNT30234068


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 6e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287202Brassica oleraceaTriticum aestivum89.8358.9786.56424forward
CNT30598511Brassica oleraceaFraxinus excelsior97.0370.3584.93458forward
CNT30232362Brassica oleraceaAnanas comosus61.6550.9682.47291forward
CNT30624959Brassica oleraceaDaucus carota62.9287.3583.16297forward
CNT30350895Brassica oleraceaEragrostis tef97.4640.7486.74460forward
CNT30644842Brassica oleraceaCannabis sativa49.7958.1788.94235forward

Expression of CNT30234068

Peptides detected in this lncRNA

>peptide 1 (72 aa)
ATYPRLRSLTATFLTLNPTLSPGSASTRDSWCISTDLTSVVNPDGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

>peptide 2 (42 aa)
NIPTLKILDSNILDIESDVVTWKCLHKRLVVHLDRLDLSGQP*

Sequence

>CNT30234068
GCAACATACCCACGCTTAAGATCCTTGACAGCAACATTCTTGACATTGAATCCGACGTTGTCACCTGGAAGTGCCTCCACAAGAGACTCGTGGTGCATCT
CGACAGACTTGACCTCAGTGGTCAACCCTGATGGAGCAAAGGTGACGACCATACCGGGCTTGAGCATACCAGTCTCAACACGACCCACTGGCACCGTTCC
AATACCACCGATCTTGTAGACATCCTGAAGTGGGAGACGGAGTGGCTTGTCTGAGGGCCTCTTTGGCTCGTTGATCTGGTCAAGAGCCTCAAGGAGAGTT
GGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAATCCGGAGATGGGGACGAATGGGATTTTGTCAGGGTTGTACCCAA
CCTTCTTCAAGTAGGAAGACACCTCCTTGATGATCTCATCGTACCTAGCCTTGGAGTACTTGGGGGTTGTTG