Detailed information on CNT30234046


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 5e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373937Brassica oleraceaArabidopsis thaliana66.1590.3389.3383forward
CNT30616538Brassica oleraceaSesamum indicum33.5139.5181.96194forward
CNT30630954Brassica oleraceaVigna unguiculata53.253.3882.47308forward
CNT30711471Brassica oleraceaGlycine max45.9419.6581.58266forward
CNT3085816Brassica oleraceaVigna radiata60.4554.8678.86350forward
CNT30172058Brassica oleraceaTrifolium pratense67.1825.6478.41389forward
CNT30480205Brassica oleraceaArabidopsis halleri100.6977.2288.16583forward
CNT30572302Brassica oleraceaVitis vinifera27.2922.8782.91158forward
CNT30326027Brassica oleraceaAsparagus officinalis56.357.2981.6326forward
CNT30114814Brassica oleraceaEutrema salsugineum97.7568.6989.75566forward

Expression of CNT30234046

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MTTRPPPLEAPTLRRRSLEGFKAVCPAKEECWIADVAILVYLNSKQK

>peptide 2 (58 aa)
MVCSLRMVLSTWDDALRSRLDGTAHDDATTSVGSSDFAEEIVGGLQSRLSGERGVLDC*

>peptide 3 (30 aa)
KRVKPFTKRSTSDSVPFDQPHQHNLRSPDS*

>peptide 4 (44 aa)
MCNLKRRALPICCGLPPAHGSSRRFLDRLRDRRCPNRSLRGIHR*

Sequence

>CNT30234046
AAGCGGGTCAAGCCCTTCACCAAGAGGTCCACCTCCGATTCTGTACCCTTCGATCAACCCCATCAGCACAACTTGAGAAGCCCAGATAGCTAATATGCTT
TGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAATCAAGCCCTCCTTCTGAGAAGATCTGAGACCCTGCCTTGAACCACACGGCTTCACCGAATTTGACTC
CGTTTTTGGAGAGAATCTCTGGGAATGTGCAACCTAAAGCGCCGAGCATTGCCCATCTGCTGTGGATTACCTCCAGCTCACGGTTCTTCGCGAAGGTTTC
TGGATCGGCTGAGAGACCGGCGGTGTCCCAACCGTAGTCTCCGGGGTATTCACCGGTAAGGTACGATGGTGTGTTCTCTGAGAATGGTCCTAAGTACTTG
GGACGATGCTCTGAGGAGTAGACTTGACGGTACGGCGCATGACGACGCGACCACCTCCGTTGGAAGCTCCGACTTTGCGGAGGAGATCGTTGGAGGGCTT
CAAAGCCGTTTGTCCGGCGAAAGAGGAGTGCTGGATTGCTGATGTGGCCATTCTTGTTTATCTCAACTCCAAACAGAAA