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Detailed information on CNT30234026


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Brassica oleraceaOryza sativa93.9577.5593.57373reverse complement
CNT30671914Brassica oleraceaSetaria viridis94.4622.5593.87375reverse complement
CNT30641383Brassica oleraceaNymphaea colorata83.6310.6392.47332reverse complement
CNT30378673Brassica oleraceaArabidopsis thaliana73.823.596.25293forward
CNT30730480Brassica oleraceaCorchorus capsularis92.729.3994.84368forward
CNT30505427Brassica oleraceaNicotiana attenuata94.2113.6895.99374reverse complement
CNT30156864Brassica oleraceaPistacia vera85.8923.1892.08341forward
CNT30221603Brassica oleraceaHordeum vulgare94.4631.1293.33375reverse complement
CNT30389404Brassica oleraceaTriticum turgidum95.4726.1993.67379forward
CNT30569654Brassica oleraceaActinidia chinensis86.159.7793.86342reverse complement
CNT30592527Brassica oleraceaMusa acuminata29.2234.7393.97116reverse complement
CNT30543278Brassica oleraceaBrassica napus98.9914.5698.73393reverse complement
CNT30511493Brassica oleraceaSolanum lycopersicum23.4310.498.9293forward
CNT30555751Brassica oleraceaOryza glaberrima44.3324.6891.48176forward
CNT30147388Brassica oleraceaMedicago truncatula93.9519.2794.1373reverse complement
CNT30438073Brassica oleraceaAegilops tauschii84.1341.0395.81334reverse complement
CNT30258698Brassica oleraceaAvena sativa83.8841.2195.2333forward
CNT30207637Brassica oleraceaHelianthus annuus94.2119.1293.85374reverse complement
CNT30688989Brassica oleraceaTriticum urartu94.4619.0694.13375reverse complement
CNT30721163Brassica oleraceaTriticum spelta94.4636.3793.87375reverse complement
CNT30363124Brassica oleraceaSorghum bicolor42.0773.5788.62167reverse complement
CNT30356932Brassica oleraceaLactuca sativa95.2119.0995.24378reverse complement
CNT30429739Brassica oleraceaPapaver somniferum90.1811.1389.94358reverse complement
CNT3057903Brassica oleraceaAmborella trichopoda82.8713.7390.58329forward
CNT30106724Brassica oleraceaOryza longistaminata94.4642.1894.4375reverse complement
CNT30550626Brassica oleraceaOryza brachyantha38.2951.8890.79152forward

Expression of CNT30234026

Peptides detected in this lncRNA

>peptide 1 (42 aa)
RSTKRRVVPIIQFAPRERDGFVVKATSALSCTHRTAALSGFP*

Sequence

>CNT30234026
AGGTCGACTAAAAGGAGAGTCGTCCCGATCATCCAATTCGCTCCAAGAGAGAGGGATGGTTTTGTAGTCAAAGCAACTTCGGCACTTTCTTGTACCCATC
GGACGGCAGCCCTTTCGGGGTTTCCTTAGGGACCGATTCACTCTGCGTAGATTGATTGAACGCTGAAAGCCTTCCACTGGCAGGCGATCTTGTTTTTCAC
AGGATTTTTCGTTACTCATGTCAGCATTCTCACTTCTAATATCTCCAGGTCTTGTCACCAAAAACCTTCTCCGATTGACAGAACGTTCCGCTACTGACAC
TTGAAAAGCAGCTTTGCAAGGTCTCGTCGCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAGCTAGACCAGTGAGCTATTACGA