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Detailed information on CNT30233993


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535563Brassica oleraceaEucalyptus grandis73.7497.0684.34792forward
CNT30518094Brassica oleraceaJuglans regia80.4592.3184.49864forward
CNT30377782Brassica oleraceaArabidopsis thaliana66.6770.8991.62716forward
CNT30727590Brassica oleraceaCorchorus capsularis80.9164.1386.88869forward
CNT30525464Brassica oleraceaPhaseolus vulgaris53.54101.7781.74575forward
CNT30629525Brassica oleraceaVigna unguiculata35.9489.7785.23386forward
CNT30712097Brassica oleraceaGlycine max40.536.4685.06435forward
CNT30173274Brassica oleraceaTrifolium pratense76.8261.3486.42825forward
CNT30146334Brassica oleraceaMedicago truncatula57.8262.4784.22621forward
CNT30665783Brassica oleraceaTriticum dicoccoides7790.7883.43827forward
CNT3059230Brassica oleraceaArabidopsis lyrata82.2273.4691.73883forward
CNT30132437Brassica oleraceaLolium perenne81.7573.0483.6878forward
CNT30608730Brassica oleraceaGossypium raimondii41.7174.6783.04448forward
CNT30127375Brassica oleraceaCorymbia citriodora48.793.7384.7523forward
CNT30685098Brassica oleraceaTriticum urartu47.5834.7686.11511forward
CNT30706337Brassica oleraceaPrunus avium77.7571.6186.59835forward
CNT30594443Brassica oleraceaEragrostis curvula81.8475.7185.55879forward
CNT30724026Brassica oleraceaLupinus angustifolius77.9358.1385.3837forward

Expression of CNT30233993

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSLTATFLTLNPTLSPGSASTRDSWCISTDLTSVVNPDGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

>peptide 2 (81 aa)
MTPTATVCLMSLTAKRPNGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPDRLSILVRISENLTAMWEVWQSRTGA*

>peptide 3 (74 aa)
MSVVNKKKSLKTHQSFFKQKEQSMREVSSFGTLLDCSLGDLGTGWVLLVNTLDDTNSNRLSHVPNSETSQWWVL*

>peptide 4 (29 aa)
MVGTLRKSQQPWAWLESSSPYQHLHSSKT*

Sequence

>CNT30233993
TTAAACGAACAATAGAAAGCATTAGGCAAAATTATCCAGAAACTGCATAACTAAAACCATAAGTAACAGAGACATCAAAAAAAGGTAGAGAGATGAGTGT
CGTAAACAAAAAAAAAAGCCTCAAAACACATCAAAGTTTTTTTAAGCAAAAAGAACAAAGCATGAGAGAAGTCTCATCATTTGGCACCCTTCTTGACTGC
AGCCTTGGTGACCTTGGCACCGGTTGGGTCCTTCTTGTCAACACTCTTGATGACACCAACAGCAACCGTCTGTCTCATGTCCCTAACAGCGAAACGTCCC
AATGGTGGGTACTCTGAGAAAGTCTCAACAACCATGGGCTTGGTTGGAGTCATCTTCACCATACCAGCATCTCCATTCTTCAAAAACTTAGGCTCCTTCT
CGATCTCTTTACCAGATCGCCTGTCAATCTTGGTGAGGATCTCAGAGAACTTGACTGCAATGTGGGAGGTGTGGCAATCAAGAACTGGTGCGTAACCGTT
ACCGATCTGACCAGGGTGGTTCATGATGATGACTTGGGAAGTGAAGTTAGCAGCTCCCTTGGCAGGGTCATCCTTGGAGTTGGATGCAACATACCCACGC
TTAAGATCCTTGACAGCAACATTCTTGACATTGAATCCGACGTTGTCACCTGGAAGTGCCTCCACAAGAGACTCGTGGTGCATCTCGACAGACTTGACCT
CAGTGGTCAACCCTGATGGAGCAAAGGTGACGACCATACCGGGCTTGAGCATACCAGTCTCAACACGACCCACTGGCACCGTTCCAATACCACCGATCTT
GTAGACATCCTGAAGTGGGAGACGGAGTGGCTTGTCTGAGGGCCTCTTGGGCTCGTTGATTTGGTCAAGAGCCTCAAGGAGAGTAGGTCCCTTGTACCAG
TCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAATCCGGAGATGGGGACGAATGGGATTTTGTCAGGGTTGTACCCAACCTTCTTCAAGTAGG
AAGACACCTCCTTGATGATCTCATCGTACCTAGCCTTGGAGTACTTGGGGGTTGTTGCATCCATCTGGAACAAG