Detailed information on CNT3023361


BLAST search results

BLAST vs Swiss-Prot:
sp|O49886|CYPH_LUPLU, E-value = 5e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618033Populus trichocarpaSesamum indicum20.4616.5880.6134forward
CNT30507180Populus trichocarpaNicotiana attenuata29.3128.3282.81192forward
CNT3043301Populus trichocarpaPrunus dulcis32.6730.0182.24214forward
CNT30569495Populus trichocarpaActinidia chinensis37.142.9381.48243forward
CNT30155236Populus trichocarpaPrunus persica44.1232.5580.28289forward
CNT30430128Populus trichocarpaPapaver somniferum51.7641.5481.71339forward

Expression of CNT3023361

Peptides detected in this lncRNA

>peptide 1 (38 aa)
KGEMIHSIIISVNLIRIIKGQQHLKKHNQSPIKDSLCR*

>peptide 2 (39 aa)
MFPIKPFSLICTYEKLRPISARPSMFLYEILISKFRSID*

Sequence

>CNT3023361
AAAAGGTGAAATGATTCATTCAATTATTATATCTGTAAATCTCATTAGGATCATTAAAGGACAGCAACACTTGAAGAAACACAATCAGAGTCCAATTAAA
GACTCGTTATGTAGATAGATACATAAACACACCAGCATATCACAAATCCTGTGTCCCTCAAGAAAGCTGGCCGCAATCAGCAACAACAACAGGCCTGGAG
GTCCTTCCACCACTAGATCCAACCTTCTCTATAGCCTTGACAACATTCATACCCTCCACAACTTTTCCGAACACCACATGTTTCCCATCAAGCCATTCAG
TCTTATCTGTACATATGAAAAACTGAGACCCATTAGTGCCAGGCCCAGTATGTTTCTTTATGAAATTCTCATCAGCAAATTTCGCTCCATAGATTGATTC
TCCTCCGGTTCCATTCCCCGCAGTAAAATCCCCTCCTTGACACATGAATCCAGGGATCACTCGATGAAAAGTCGAGCCTTTGTAGTGTAAAGGCTTGCCG
CTTCGGCCTTTGCCTTTCTCTCCAGTGCAAAGAGCCCTGAAGTTCTCTGCGGTTCGTGGAGTTGTGTCCGCGAACAGCTCAATCACGATCCGGCCGGCTG
GGACGCCGCCTATTGTCATGTCGAAGTAGACCTTAGGGTTTGCCATTGAAAATTT