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Detailed information on CNT30233494


BLAST search results

BLAST vs Swiss-Prot:
sp|P69315|UBIQP_LINUS, E-value = 1e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3073437Brassica oleraceaBrassica juncea102.280.6794.35743forward
CNT30214147Brassica oleraceaHelianthus annuus71.6664.886.56521forward
CNT30477838Brassica oleraceaArabidopsis halleri74.4296.0988.17541forward
CNT30643392Brassica oleraceaCannabis sativa65.0667.8685.84473forward

Expression of CNT30233494

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSSVMVLPVKVFTKICIPPRSLSTK*

>peptide 2 (45 aa)
KVKRNDYYIFHNREIRFGSQGKRKQGRKSSSIIHQGLYKTPKHKP*

Sequence

>CNT30233494
AAAAGTAAAACGCAACGACTATTATATATTTCACAATAGAGAAATCCGATTTGGTTCACAAGGAAAGAGAAAACAAGGACGCAAGAGTTCATCAATTATT
CATCAGGGGCTTTATAAGACCCCAAAACACAAACCTTAAGTACTTTTTAAAAGAAAACCAGACACACAGGACGAGAGTTTTAGATACCACCACGGAGACG
AAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCC
GGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTCA
CAAAAATCTGCATACCACCACGAAGCCTGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCATCCTCGAGCTGCTT
TCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCAACCTCCAAA
GTGATCGTCTTTCCCGTCAACGTCTTAACGAATATTTGCATACCACCACGGAGCCTGAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCG
CAAGAGTTCTTCCATCCTCCAACTGCT