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Detailed information on CNT30233220


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-180

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546269Brassica oleraceaIpomoea triloba99.7486.0882.92773forward
CNT30636126Brassica oleraceaCapsicum annuum99.7441.983.7773forward
CNT3095105Brassica oleraceaSolanum tuberosum99.8766.6184.63774forward
CNT30541271Brassica oleraceaBrassica napus86.9765.2596.29674forward
CNT30510145Brassica oleraceaSolanum lycopersicum82.3244.885.11638forward
CNT3073349Brassica oleraceaBrassica juncea99.6169.4297.67772forward
CNT30613113Brassica oleraceaArabis alpina86.7173.1285.71672forward
CNT3066849Brassica oleraceaLeersia perrieri97.8156.7483.11758forward
CNT30706353Brassica oleraceaPrunus avium99.7443.885.12773forward
CNT30643414Brassica oleraceaCannabis sativa97.6871.9683.75757forward
CNT30114931Brassica oleraceaEutrema salsugineum98.0668.5386.84760forward

Expression of CNT30233220

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MKSRLLLDVVVRKSSSILQLLAGKDEPLLVRWDSLLILDLGLNVVDGIRAFHLEGDGLSGESFH

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSNVIVLPVRVFTNICMPPRSLRTK*

>peptide 3 (42 aa)
SLSWILALTLSMVSELSTSSVMVLPVKVFTKICIPPRSLSTK*

>peptide 4 (38 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSRVMVFPVRVF

>peptide 5 (90 aa)
FLVLDLGLDVVNGVGALHLQCDGLAGQGLHKNLHTTTKPEHQVKCRLLLDVVVSKSATILKLLSSEDETLLVRRNAFLVLDLSLDVVNGV*

Sequence

>CNT30233220
CTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCCAGTGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAAATCTG
CATACCACCACGAAGCCTGAGCACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAG
ATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATAGTCT
TGCCGGTAAGGGTCTTCACAAATATTTGCATGCCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCG
ACCATCCTCGAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCG
GAGCTTTCAACCTCCAAAGTGATCGTCTTTCCCGTCAACGTCTTAACGAATATTTGCATACCACCACGGAGCCTGAGGACGAGATGAAGAGTCGACTCCT
TCTGGATGTTGTAGTCCGCAAGAGTTCTTCCATCCTCCAACTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGAT
CTTGGCCTTAACGTTGTCGATGGTATCAGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCAC